Array 1 3086-176 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDC01000163.1 Acinetobacter baumannii strain ARLG-1948 PR375_NODE_90.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3085 29 96.6 31 ............................T TCACGCCATTAGGATAAACTGTTGTGCCAGT 3025 29 96.6 31 ............................G TTACCAATGGCATTACCTTGAGTCAAATCCA 2965 29 100.0 31 ............................. ACTGGTTGCGGTACAGGTTATGTTCCGGGTA 2905 29 100.0 31 ............................. CCGACCCCCGCCCCGCTAGCCGCTGCGCCCG 2845 29 100.0 31 ............................. GTTTCACAATACAGCCCAAAGAATCAGGGTT 2785 29 96.6 31 ............................T TGTTTAGACTTGTTAATAGTTTGTTGAGAAT 2725 29 100.0 31 ............................. TCACCCACCTCTTAACTCTTCATCTGCCAAT 2665 29 96.6 31 ............................T TTGCTAAAAGTAAGGTGATGTTCGCCATTCT 2605 29 96.6 31 ............................T GAACGCGCACATACATGTTCTGTTTTGCTTT 2545 29 96.6 31 ............................T ATAGGTTTACGTTTCAAGCTTACAGACGCAC 2485 29 100.0 31 ............................. GAATCAGCTCGAGGCAAATCAATGCGGTGTG 2425 29 96.6 31 ............................T GAACCGCCTGACTATTCTTATGTAGCGAACG 2365 29 96.6 31 ............................T TGAACAACAAGAAGTCTTGCGGGCTGGTTGT 2305 29 100.0 31 ............................. CAGGGAAATCCGACTGGTGGTCAATCCATAT 2245 29 96.6 31 ............................T CTAACCGTGATACTTTCTCTTTAATTAAAGA 2185 29 96.6 31 ............................G GAACTGGATAGAGGGTAAATCAGCACCAACT 2125 29 100.0 31 ............................. ATATTCTCAAGATCAGATGATTAAGGACCTT 2065 29 100.0 31 ............................. ATTGTTGTAGCTTCGGCGTAGCTTAATGGTG 2005 29 100.0 31 ............................. TCCCAAACAAACAATCCAGCATTTTCACCTT 1945 29 100.0 31 ............................. CGGTAAATAAATACTTGGTTAATGTCTTCAT 1885 29 96.6 31 ............................T GCCTCCCCGATAAACTGCGTTAAACTATTAC 1825 29 100.0 31 ............................. TTAATAATCAGCCTGTCACCGGCAACTGCGA 1765 29 96.6 31 ............................T CGAGCTGATTCTGGTTGGCTTGTACGTGTAC 1705 29 100.0 31 ............................. AGATGCCGTACAGCTTAATTGTTTTTAACAT 1645 29 100.0 31 ............................. TTACCGCCTGCACCAACTACACGTGGAACAA 1585 29 100.0 31 ............................. CAGAAAGCTGAAGTAAATCAAAAGCAGTAAA 1525 29 96.6 31 ............................G ATCAACGATTGGGATATTCGAAAAGTAGAAA 1465 29 100.0 31 ............................. ATCTGATCCATAAACGTTGTGCCCTTGAAGA 1405 29 96.6 31 ............................C ACAGGAATGGTTGCAAATCGGCTATGTTACA 1345 29 96.6 31 ............................T TTACTTAGCAGCCCAAATTTATTCTAACAAC 1285 29 100.0 31 ............................. TAATTACTTTAAGCAACAACCACAAGGCTTT 1225 29 96.6 31 ............................T ATGCAAATTTTAAATAGTTAAATTGCGAAAC 1165 29 96.6 31 ............................T ATTAAATCAGGCTGTCAAAATGGCGCGACTT 1105 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 1045 29 96.6 31 ............................T TAAGGGGTCAAACTATGAAATTAACCGATGA 985 29 96.6 31 ............................T CCGACTGATCCGCCTGACCAACCGCCTCCGA 925 29 100.0 31 ............................. TGTGCGATCATTAGCATTAGGTGCAGATTCT 865 29 100.0 31 ............................. CCATGTGAACATGCATGCATTGATGCAATAT 805 29 96.6 31 ............................T TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 745 29 96.6 31 ............................T TGCACTAAACGCTTAGTTACAGACCAACCTT 685 29 96.6 31 ............................T GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 625 29 96.6 31 ............................T AACTCTATTGTTGTTATCCCGACATCTATTA 565 29 96.6 31 ............................T CTATTTTTCCATTCGGCACATGCTTTTTTTA 505 29 100.0 31 ............................. TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 445 29 100.0 32 ............................. ATTACCCCAATTACTGCTACAGCACCCCCAAT 384 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 324 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 264 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 204 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 49 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTCAAATGAATAAGTCGACACCTAAAATTTATCGCACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCGTGGGAATATTGCCATTTGGTTTGATCCCAAAACACA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54705-51915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDC01000019.1 Acinetobacter baumannii strain ARLG-1948 PR375_NODE_18.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54704 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 54644 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 54584 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 54524 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 54464 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 54404 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 54344 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 54284 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 54224 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 54164 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 54104 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 54044 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 53984 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 53924 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 53864 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 53804 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 53744 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 53684 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 53624 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 53564 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 53504 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 53444 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 53384 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 53324 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 53264 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 53204 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 53144 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 53084 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 53024 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 52964 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 52904 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 52844 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 52784 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 52724 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 52664 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 52604 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 52544 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 52484 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 52424 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 52364 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 52304 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 52244 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 52184 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 52124 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 52064 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 52003 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 51943 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 47 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATC # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCATT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9204-17040 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDC01000144.1 Acinetobacter baumannii strain ARLG-1948 PR375_NODE_22.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 9204 30 93.3 30 ............................GA CCAGATCTAGGTGGTAAAAACCGTAACGAG 9264 30 100.0 30 .............................. CAAACGTTTTCTCAAATGAACGTGGGGCAA 9324 30 96.7 30 ............................A. GTTTCTAAGACTGACGATGGTCAAACGATA 9384 30 96.7 30 .............................A TAGATGAAGCGGACATCGTAAATGCCCTTA 9444 30 100.0 30 .............................. CACGAATTCGAGCGTCTAGAGTTTCAGGTT 9504 30 96.7 30 .............................A GTAAGTGCAGGTTGGACAATTACAGATGGA 9564 30 93.3 30 ............................AG ATGGATATATGAATGAATGATTGTTGGCCA 9624 30 96.7 30 ............................A. CTTCAATAGTAGGGTACATACTGTCCCCAA 9684 30 93.3 30 ............................AG TAAGATTCTGATGATAAACAGTAATTTGGT 9744 30 96.7 30 ............................G. GCACCCTGAAAACAGAATGCACAGTAGAGT 9804 30 96.7 30 ............................G. GCCGCCGCCAAAAAAGTGGGTGTCATTTGT 9864 30 96.7 30 ............................C. TTACGAAAGTGGTCGCTGATGAAAGCACAA 9924 30 96.7 30 ............................A. TGTGTAAATGCTCAATCAATTCTTTTGAAG 9984 30 93.3 31 ............................AA AGAAGCGGGCAAGGTTGCGGGTACTGATCTC 10045 30 96.7 30 .............................G GTACAGATGGAACGGCATTTATTGGGAATC 10105 30 100.0 30 .............................. CGCAAAAACAATAAGCTCCCTGTACTTTCT 10165 30 96.7 30 .............................G ATTCAATACGCCAGTAATTAGGTGCGGAAC 10225 30 93.3 30 ............................AA CAAGAGTTGTTGCAGGTAGTAGCCAAAGAA 10285 30 96.7 30 .............................A CCCAAAGAAAAACGGGTAATCAAACGGGTA 10345 30 93.3 30 ............................AG TTCGGGTCTACCTTGAGTGCGTTAGCTAGA 10405 30 93.3 30 ............................AG TAAATACACAAGTTAATGAATTGCAAGTAT 10465 30 96.7 30 ............................A. GCCTCTTCATAACCTTTTTCATATAGAAGA 10525 30 96.7 30 .............................A CCACATTCCTTAATAGGAGGCAGATACTCA 10585 30 96.7 30 .............................C AAATAGATCTCAGTGTTCTGTATGCCAAAA 10645 30 93.3 30 ............................GG TTACTTTGCCAAACGGTACTGTTATTCCGC 10705 30 93.3 30 ............................AC GATTTCCCAAAAAGGGCAATCCCAATCTTT 10765 30 100.0 30 .............................. TATCGGCAAGTGTCTTTTAAAGGGCCTTAA 10825 30 93.3 30 ............................AA AAGTTTGGAATGAACTCACCCAAGAAATCG 10885 30 96.7 30 ............................C. AAAACTGGACTGATTGTTTCACGTGCTGCT 10945 30 93.3 30 ............................GC AGTAAAACCCATCGATGATTTACCTAAACC 11005 30 93.3 30 ............................CA TGCGACGAATTTGCCTCCGTTTACGGTGAT 11065 30 93.3 30 ............................AG AATGTTTACCTGTGATTTTCGCGGTTAACA 11125 30 93.3 30 ............................AG TACGGTGAGCACCACGGTCAAAGTCAAAAG 11185 30 100.0 30 .............................. GGTGGTGATAAGGGGTGCCGAGCCAAGTCA 11245 30 93.3 30 ............................AC TCCCACACCTTTTACTCGACCTTGGTGGTG 11305 30 96.7 30 .............................C TAGAGCTAGCTCCAATTCCAATGTTTTCGG 11365 30 96.7 30 .............................C ATACAACAGTGCAAAAGTCTGGTGGTAAGG 11425 30 93.3 30 ............................CA TAGCAACACCCTTAATTAACTTAGGTGGAA 11485 30 100.0 30 .............................. GGTATAACTAGGATTGCCTTTCTTGGTGTA 11545 30 93.3 30 ............................CA CTGGATGAGCTATAACCCCTACTACGAAGA 11605 30 100.0 30 .............................. TACAAGGTAAATTCTGTGTTTTTAGAGCAA 11665 30 93.3 30 ............................AA TTAAAAATCTATTGTAAAGTCTTTTGTTCC 11725 30 93.3 30 ............................AG TTAAAAGCTGAGCAATACCAGTACCGCCTG 11785 30 93.3 30 ............................AC GGGCATTTTGTATCACGTATTGCTGTGTTA 11845 30 96.7 30 ............................G. GAAGATTATGCAAGACGTGTCTACGGTCGA 11905 30 93.3 30 ............................CC TTTCTTGTGCGGCCTGTGATTCGCTCTATT 11965 30 100.0 30 .............................. CAACAGACTGAGCAAAAGCTTCACTAGGAA 12025 30 93.3 30 ............................AA CCGCGTTTGTGATTAGCGCATCATTACCAG 12085 30 96.7 30 ............................G. GTTAATGTGAAAGCCCCAACTCATTTAGTA 12145 30 96.7 30 ............................A. AAAAAGTACCGCCATCATCATTGCTTACAC 12205 30 93.3 30 ............................AC GAACTGTGCTTGCTTCTGTTAAGCGTTCAG 12265 30 96.7 30 .............................G ACACACTAAGCAAGTTGGGAGCATTGAATT 12325 30 96.7 30 ............................G. CTATACACATCTGTTCATGATTACCACGAA 12385 30 93.3 30 ............................GG GCTAAACTTCCTTTGGTACCATCTTGAAGA 12445 30 93.3 30 ............................AA TCGAAATGACAGCGATGGACCGCAATATTT 12505 30 93.3 30 ............................GC AGATAAGTGGTTGCGTAATGATGTGGCTAA 12565 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 12625 30 93.3 30 ............................AA CTAATCGGCAATCCTCTGTCAGCTTGATAA 12685 30 96.7 30 .............................A AATACAATGGAACAGAGACTGTTAAGAATG 12745 30 96.7 30 ............................A. TCATTGGTGGTGAGGATGAGGACCAATGGA 12805 30 93.3 31 ............................CA TTTTTACGCATAACAATATTACCTTTACGCT 12866 30 96.7 31 .............................A TTTAAACCATTGCGTTAAAAACAATTCATAT 12927 30 96.7 30 .............................G CTGTTGTGCTTGTTGCGGTTGGGATGCTTC 12987 30 93.3 30 ............................AC TAATTCAACAGGTACGGCATACGTTAATCC 13047 30 96.7 30 .............................G ATGATGTTTGTTGGATTGCAACTGATGAAG 13107 30 96.7 30 .............................A GTGAAGAAGTATCAAACATTGTTCAAGTAA 13167 30 96.7 31 .............................G TTAGAGCCACACAGCAAGCTACGCAGAATGT 13228 30 100.0 30 .............................. CTTCATCTTTAAATTTTCGCATTGCTGTGC 13288 30 100.0 30 .............................. TTAGATCGTATTCGTCGTGAAAAATTACCA 13348 30 96.7 30 .............................G TCCCTGCTGCAATCATTTCAAGAATCTTTT 13408 30 96.7 30 .............................C TGAGATGTACGCTAAACAATTCACGAATGC 13468 30 96.7 30 .............................G AATTTTACAAACTAAAGCTGGACGGAAAAT 13528 30 96.7 30 ............................A. CGATCTTAGCACCAAAATCGTAATATGTAG 13588 30 100.0 30 .............................. GAGCTCTCTCACAACTAAGCGAATTTAAAT 13648 30 100.0 30 .............................. CTGGAAAGCCTATTATGGATAGGATTATCG 13708 30 100.0 30 .............................. GAGCACGTTCACAGCTAAGCGAATTTAAAT 13768 30 100.0 30 .............................. GTGATTGGCGCGAATCTATTAACAAAGAAC 13828 30 96.7 30 .............................C TTGAAGTCGAGTATAGTTTTTAATCTTATG 13888 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 13948 30 96.7 30 ............................A. AGAGTTTTCGAGAGTTCGATTAAGCACATA 14008 30 96.7 30 ............................A. GTGAACGGCCAAGCATAATAATCAGGCCAT 14068 30 93.3 30 ............................AA CCATACCAAGCTGCAAACACAACCGCACAG 14128 30 93.3 30 ............................AC ACCAGTTACAACGTAATTACCATCCAAGAA 14188 30 93.3 30 ............................AC AAAAAGCTAAGTCTTTGGATGGGTGATGTT 14248 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 14308 30 96.7 30 ............................A. GAAGCTAAGAAATGGGAACACCTGCAAGAT 14368 30 93.3 30 ............................AC GTAAAAGGACTTTACGGTTTGGGTCAGCTT 14428 30 96.7 30 .............................C TGGATGTGGCCAAAGCAATTTATCGCAAAA 14488 30 93.3 30 ............................AA CAACACCAATACCTCTGTTAAAATTTTCTT 14548 30 93.3 30 ............................AC CAAACTTCTGTTTTAACTCTTCGCGTTGTT 14608 30 96.7 30 .............................C TGGATGTGGCCAAAGCAATTTATCGCAAAA 14668 30 96.7 30 .............................G TCACAGATTCATAGTGCTTTATAGCTAAAG 14728 30 100.0 30 .............................. AAATTGTTTTGCATGAAGGTAGCTCGCATG 14788 30 96.7 30 ............................G. GAATATCTCCAACTGCATACAGCTTGCCTT 14848 30 93.3 30 ............................AA AACCATCCACAGGGTAACCATTAGCAATAC 14908 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 14968 30 100.0 30 .............................. CTGTTAGCTCTGCTGGATCATCAACGCCAT 15028 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 15088 30 96.7 30 ............................A. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 15148 30 100.0 30 .............................. TTGCAATCATGATCCGGACGATAAAAAAAT 15208 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 15268 30 96.7 30 ............................A. GACGAACCTGTCTTACCTTCAGATCCTTCT 15328 30 96.7 30 ............................A. ACACTCATCGCGATTCTATTAAAGTCTGTT 15388 30 100.0 30 .............................. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 15448 30 93.3 30 ............................AA AATGAGAAATTCATAACCATATACCCCGAG 15508 30 96.7 30 .............................G AAGAGTTAATCAATATTATTTCTTGCTCTG 15568 30 96.7 30 .............................A TGAGAAAGAAAAAAATTGCGACAAAGATAA 15628 30 96.7 30 .............................A CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 15688 30 93.3 30 ............................AG CTAACTTACCACCGTTTGCAAATGTTTATA 15748 30 96.7 30 .............................A AAGATACGTTTTTAGCTTTTAATGTGATTT 15808 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 15868 30 96.7 30 ............................A. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 15928 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 15989 30 96.7 30 ............................A. GTCCATTTTGCGGATACGCAGATGGGTTAG 16049 30 100.0 30 .............................. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 16109 30 93.3 31 ............................AA ACTTAGATGACAAAGTATTAAAGCTCTGTGA 16170 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 16230 30 93.3 30 ............................AA TGGATGGATATGGCATAGGCAAAGACGGCA 16290 30 96.7 30 ............................A. AGAGAATCGGTACTGGATAACCTTGAGCGG 16350 30 96.7 30 ............................A. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 16410 30 93.3 30 ............................AA ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 16470 30 100.0 30 .............................. GAGAATTATGAAAAAGCAGGCTTCTATGAA 16530 30 93.3 30 ............................AA CAGACATACTTCTTTCATTTGCATCGCCAG 16590 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 16650 30 96.7 30 .............................A CGTAATAAGTACACGGTGCAATCGGTGCGT 16710 30 90.0 30 ........................A...AG AGTTTTAAACCCGCGCTACACCTTTCTAAA 16770 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 16831 30 93.3 30 ............................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 16891 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 16951 30 83.3 30 A.....AA.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 17011 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 131 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //