Array 1 384-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUT01000035.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain CVM N30673 N30673_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 383 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 322 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 261 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 200 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 139 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GCGTCTAATTGCGCGGCTTGACGAGATGATTGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1421-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUT01000057.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain CVM N30673 N30673_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1420 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 1359 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 1298 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 1237 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 1176 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 1115 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 1054 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 993 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 932 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 871 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 810 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 749 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 688 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 627 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 566 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 505 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 444 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 383 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 322 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 261 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 200 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 139 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GAAGACAACTCCTGTCTTTCCATCACTCGAAGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUT01000090.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain CVM N30673 N30673_contig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 112 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 173 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 234 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 295 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 356 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 417 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 478 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGATGCCATGTACGCCCCGTTTTTCTCAGCGACCG # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //