Array 1 67901-67625 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVB01000024.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_18.19_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 67900 29 100.0 32 ............................. GGTTCGTCGCCCCCAATGTCGAAGCTGCGGCC 67839 29 96.6 32 .........................G... TGAACCTGCGGCCCCGCAACCTCGATGACCTT 67778 29 100.0 34 ............................. CGCACCCAGCGTCTCATTCGACTCCAGCGCGAGT 67715 29 100.0 32 ............................. TGGTTCGGGCACCTGCACGATGCCACGCGGCA 67654 29 96.6 0 ..............A.............. | A [67628] ========== ====== ====== ====== ============================= ================================== ================== 5 29 98.6 33 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : GGGGCGGA # Right flank : GAAATGCTCAAACCGGAGGGAGTCCCCCCTGGCCGGCCCTCGCCCCCTTCGCGGCGGCCGGCTTGACCGATGTTGCCGCCACTGCTCGCGGATCCGGCTCCTGCCAGGGTGTGGCCATCGCAGGACGCCCGTACAATTGGCGGATGAATACTCCCCTGCCCGCCGTGCGGCTGAAGAACGCGTGGCGTTCCGGCCATCCCTGGATCTTCCAGAAACTGGTCGAGAAGCCCCCGCAGAAGCCGCGTCCGGGCGAGCTGGTCGATGCCTTCGATGTGGACGGCCAGTTCATCGGCCGCGGCTTCTACAACGGCCACTCGCGGATCGCCCTGCGCATCCTCGAGACCGATCCGGCAGTGCCGGTGGATGCCGGCTGGTTCCAGCGCCGCATCGGCGAGGCGGTGGCGCTGCGCCGCGACGTGCTGAAGCTGGACGAGGTGTCCAACGCCTGGCGCGTGGTCCATGCCGAGGGCGACGGCCTGTCCGGCCTGGTCGTGGACCGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3951-4406 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911336.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_27.28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3951 29 100.0 32 ............................. GACCCGGTCACCGCGATGCAGCGGACGAAGGC 4012 29 100.0 32 ............................. TTCACCACCAGCGCGAGCAACGCCGTCCTGGA 4073 29 100.0 32 ............................. CATGAGGCTCAGGCGGAGCAGTGGCGGCAGTC 4134 29 100.0 32 ............................. CTCACGACGGCGCTCATGCCGTCACCCGCGCC 4195 29 100.0 32 ............................. AGCATCGCGGTCGAGGCCTTCGACGGGAAACA 4256 29 100.0 32 ............................. GCCCTCGCCAACGACTGGCCCGGCGCCTGTGC 4317 29 100.0 32 ............................. CCAGGTCGTCACGTCGTCGCGCGACGGCTGCA 4378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : GAACCGAACTTCCGCACCGACGGCCTCTCCTGGAAGGCGTGTTCCCCGCGCTCGCGGGGATGAACCGGCTGTGGCCGCTGGCATTGCTGATGGCTCTGTGTGTTCCCCGCGCTCGCGGGGATGAACCGTCGGCCAGCTGGGGCCGCTTCCAGATCATGGGGTGTTCCCCGCGCTCGCGGGGATGAACCGAATTCGTTCCAGTCCACTGCACAACTCCGGCCGTGTTCCCCGCGCTCGCGGGGATGAACCGACCCATTGCGCTGGGCCGAGACGTACCTGGTCGTGTTCCCCGCGCTCGCGGGGATGAACCGGCGGACCCGATGTTCTCGTAGGCACCGATGAAGTGTTCCCCGCGCTCGCGGGGATGAACCGCTGGAGCACATCAAGGCCGCGCTGCACCAGAAGTGTTCCCCGCGCTCGCGGGGATGAACCGTAACCNGTGTTCCCCGCGCTCGCGGGGATGAACCGGTAGACATGTCAAGCGGCCTTTTGACCGTTCG # Right flank : GGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6500-7384 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911336.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_27.28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6500 29 100.0 32 ............................. GCTACCGGCCTGTACACGGAGGACGACATCGA 6561 29 100.0 32 ............................. TCCTCGGCCAAGCGCGAGCTTGCGCAGCGCAA 6622 29 100.0 32 ............................. GCACCAAAAACGGCTGCTCCCTGTATATCGGC 6683 29 100.0 32 ............................. AGCACGAACCGGACGCCAGCGGCTATGGCTGG 6744 29 100.0 32 ............................. GCGCAGGCCGATGTCCGCCGGGCGCAGGCTGC 6805 29 100.0 32 ............................. CTGTTCGTCCTGGACCCGTGCGCCGTGCTGCC 6866 29 100.0 32 ............................. TAGGTGAGCCCCTTCATTGCCGGGGCGGCCAT 6927 29 100.0 32 ............................. TGGGCCGCGCACTTCCGCGTGCGCATGGAGTG 6988 29 100.0 32 ............................. GCCTGGGACCACCAAGCGGCGCAGCACTACGG 7049 29 100.0 32 ............................. GCATACTCGCTCGCTTCAAGCGTCCACACGCG 7110 29 100.0 32 ............................. TCGACCGAGTAGGCGAGGGTTGCAATGTCGGT 7171 29 100.0 33 ............................. GGCGGCGACATCGGCCGGCTGGTGCCGCGGAAC 7233 29 100.0 33 ............................. TTTCACCGCTGTTGCCTACGACTCGCGCGTGGC 7295 29 100.0 32 ............................. GCCGTGGGCAACATGCTCTGGCCGGCGCTGCC 7356 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101526-101921 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911335.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101526 29 100.0 32 ............................. GAGCCGCCGCCGGAGTTCGATCCCGGCATGAT 101587 29 100.0 32 ............................. CCGTACACGATCAGCGCGGAAATCTTCACGTT 101648 29 100.0 33 ............................. CGCATCACCTGGGCGCGGCCGGCTGGCAGTCCG 101710 29 100.0 32 ............................. TTTTTGCGGACGTTGCGGATCGCGGCCATGCT 101771 29 100.0 32 ............................. TTATCCAGTCGCCCGCGTGGCGATATCTACAG 101832 29 100.0 32 ............................. ATTTGCGTCCGCCATTTCAGTTCATGTTCCAG 101893 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCTCGCGGGGATGAACCGTGCTCCTGGAGCACATGTACGCGATCGAGGAG # Right flank : GCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGTGTTCCCCGCGCTCGCGGGGATGAACCGCTGATTTCGTAGGGCAGCCAGCGATTCACGACGTGTTCCCCGCGCTCGCGGGGATGAACCGGAGTCGTCATCGGCCACAACCGCGACGGCAAGCGTGTTCCCCGCGCTCGCGGGGATGAACCGGGAACGACCTGCCGCCGCCGGACCTGTTCATCGTGTTCCCCGCGCTCGCGGGGATGAACCGCCGACCACGACGCGCCCGCCCTCGTACCAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102236-103120 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911335.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102236 29 100.0 33 ............................. GAGTCGTCATCGGCCACAACCGCGACGGCAAGC 102298 29 100.0 32 ............................. GGAACGACCTGCCGCCGCCGGACCTGTTCATC 102359 29 100.0 32 ............................. CCGACCACGACGCGCCCGCCCTCGTACCAGGG 102420 29 100.0 32 ............................. GAGCCTTCACCATGAACGGCAGGCCGCCTAGC 102481 29 100.0 32 ............................. AGCTGGCGCCGCTGCCGCAGTACCCGCAACCC 102542 29 100.0 32 ............................. TCGTGCCGCCGAATCCGCCATCGCCGCATGGA 102603 29 100.0 33 ............................. AAAGAGTGTGCAGGCGAACTGAAAGCCGCCCTC 102665 29 100.0 32 ............................. CCGGAGATCTACATGGTCCGGCCCGGCCAGAC 102726 29 100.0 32 ............................. CTGTTCCGGGACGCGGCCCTGGGCGTTCAGGA 102787 29 100.0 32 ............................. TCTTCGACCACCTACGCCAATGCCCGATATGC 102848 29 100.0 32 ............................. TTCAACGACTTCATCCAGAGCCTGCACCGCAT 102909 29 100.0 32 ............................. CCGGGCACCCATATCTACGCCTACCGCACCGC 102970 29 100.0 32 ............................. GTGGTCCGGCAGATCGAGTCCGAGGCCCAGGC 103031 29 100.0 32 ............................. GAGGCGGCATGAGTCGGGGGGCAGCGGATGCG 103092 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : CCGTTTTTGCGGACGTTGCGGATCGCGGCCATGCTGTGTTCCCCGCGCTCGCGGGGATGAACCGTTATCCAGTCGCCCGCGTGGCGATATCTACAGGTGTTCCCCGCGCTCGCGGGGATGAACCGATTTGCGTCCGCCATTTCAGTTCATGTTCCAGGTGTTCCCCGCGCTCGCGGGGATGAACCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGTGTTCCCCGCGCTCGCGGGGATGAACCGCTGATTTCGTAGGGCAGCCAGCGATTCACGAC # Right flank : GGTTTTGATCGGCGCGGTTGCGGGAGATATTGCGTGTTCCCCGCGCTCGCGGGGATGAACCGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTCCCCGCGCTCGCGGGGATGAACCGGACGCGAACTCCGGCGAGTCCTTGTGCGGGAGTGTTCCCCGCGCTCGCGGGGATGAACCGAACATGCGGTCGCCTGCATTCATCTTGACAACGTGTTCCCCGCGCTCGCGGGGATGAACCGATGGACGGCACCGTGGCTGCCCCGGGGGAGCGGTGTTCCCCGCGCTCGCGGGGATGAACCGGGCAGCGGCAACGCCGTCGTGCAGATGACGGGCGTGTTCCCCGCGCTCGCGGGGATGAACCGGGCTGCGTGGCGTTCGGCACCGGCATGGACATCGTGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 105472-107034 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911335.1 Pseudoxanthomonas sp. J35 PseJ35DRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105472 29 100.0 32 ............................. ATCGGCGCCGATGGCGCGCGCCTGGCCAACGA 105533 29 100.0 32 ............................. CTCCCAGAAATGGCGCTGGAAACCATCGACTC 105594 29 100.0 32 ............................. CAGGAGAGCGCCATGGCCAACACATTCACGCC 105655 29 100.0 1 ............................. N Deletion [105685] 105685 29 100.0 32 ............................. GCCTCCACGTAGCACTCGTGCTGCGGGAAGTG 105746 29 100.0 32 ............................. CCGAAGAACAACCAGGAGACGTTCCAGCTGCA 105807 29 100.0 32 ............................. CTCGATTCTTTCTACGAAGCTGACGATCGACA 105868 29 100.0 6 ............................. CTGGAN Deletion [105903] 105903 29 100.0 32 ............................. CTCGATTCTTTCTACGAAGCTGACGATCGACA 105964 29 100.0 32 ............................. CTGGAGCAGGGCGCCTTCATCGCGCGCCTGCT 106025 29 100.0 33 ............................. TACTCCGTCGCCGGCGTCGTCCACCGCGGCGAG 106087 29 100.0 32 ............................. GTGCCCACCGGCGAGATCGCCGCCTACCGCAA 106148 29 100.0 32 ............................. GGGCGAGGTCCGAGCCAGCCCATCAGGCTGCC 106209 29 100.0 32 ............................. GTGACTCGCAGGGTCATGCCGCCTTCCTCCGC 106270 29 100.0 33 ............................. TGGTGCATTGCCCAGGCTGAGGCCATCGAGGCG 106332 29 100.0 32 ............................. AACGCCGTCGTCGCCGCGTGGCTGCGCGCCGG 106393 29 100.0 32 ............................. CGGACGGATGGCCGCGAGCAGGACCTGGAGTG 106454 29 100.0 32 ............................. GCACCTTGGGGCGCCCTTTGGTCACAGTGGTC 106515 29 100.0 33 ............................. GCCGCCGACTCATCCGGGATGGCCGAGTCCGGC 106577 29 100.0 32 ............................. CGTTCGATCTCGCCCTGCCAGCGCTGCAGCTG 106638 29 100.0 33 ............................. GGTTCGCTGCGCTTCCGCTCCACCGCCGACATG 106700 29 100.0 32 ............................. TTCCACGCCGGACGCGAGGTACGGGCGGAGAT 106761 29 100.0 32 ............................. GCCAGCTCCTTTCCATGGACGCGCTGGCGGCT 106822 29 100.0 32 ............................. AGCCGACCCGCGAATACAGCGCAGAGATCAGC 106883 29 96.6 33 ............................T TCAGGATGTCGGCCACCCGATGCTGGTGGTCGC 106945 29 100.0 32 ............................. GCTACCGGCCTGTACACGGAGGACGACATCGA 107006 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.9 30 GTGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //