Array 1 163311-160780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZML01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163310 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163249 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163188 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163127 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163066 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163005 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162944 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162883 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162822 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162761 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162700 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162639 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162578 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162517 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162456 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162395 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162334 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162273 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162212 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162151 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162090 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162029 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161968 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161907 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161846 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161785 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161724 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161663 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161602 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161541 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161480 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161419 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161358 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161297 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161236 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161175 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161114 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161053 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160992 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160931 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160870 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160809 29 93.1 0 A...........T................ | A [160782] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181433-179818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZML01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181432 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181371 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181310 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181249 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181188 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181127 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181066 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181005 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180944 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180883 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180822 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180761 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180700 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180639 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180578 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180517 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180456 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180395 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180334 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180272 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180211 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180150 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180089 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180028 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179967 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179906 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179845 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //