Array 1 190133-190732 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWJ02000020.1 Leptospira borgpetersenii str. 200801926 ctg7180000004443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 190133 29 100.0 32 ............................. TCCTGTATCGCCACTGGTGTAGCCCAAGCACT 190194 29 100.0 32 ............................. AGCAAGAATCTCTTTATATCTACGTTCGACAA 190255 29 100.0 32 ............................. GAGAAGACGCATGGGGCGGATATGTTTACAAC 190316 29 100.0 32 ............................. CTCGGATCCTATAGAGGTTATCGTTGAGAGTT 190377 29 100.0 32 ............................. TAGATTGGCAGATATAACCTTACCCGCCATCT 190438 29 100.0 32 ............................. AAATAAGAGGGGAAAGCGTGGAATATATACTA 190499 29 100.0 32 ............................. GGAAAGCCCGTCATTTGTAACGCAATCATATG 190560 29 96.6 55 ...C......................... ACGGGACTACCGAATCCGGAGAATGGAAGAACGATAGGAAATACTTTACTGTCGA 190644 29 100.0 32 ............................. AGTAGAATCAAAAACCATCCTTTCATCGTTTA 190705 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ======================================================= ================== 10 29 96.9 35 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAAGGTTTGGTTCGGGGAATTGGAAATCTGGGGAAAATCAACCCGACGGATCTGGAAAGAAAACATCCAAGTTATGATCAAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAATGGAGATTGTCCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATCTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : CAAGTTGAAGAGGACTTTAGAATCAGAAGGATCCAAACGCACATTTTTGAAGTGTTCCGACAAGAATGAGGTTTTTTACTTGCAAAAAGTATGATTTTCCGATAGTGGAAAGTCCTCCAAGCCTTTCCTCCTCCCAAAATTAGGGAAAACTCATGCAACGCTCTCTATAAATCACTAGCAGGTGTAGTTTCACAGAGGATTTGTCGGAATTCCGACAGATTTATCTTCGACTCCAAGTGCTTGTGGGGTTATGATAATCTACGGTCGGTTTTAGAGTTCAGGGTGCAGTTTACTCGATATTGATGAACTCGGCGGGATCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 259433-260132 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWJ02000017.1 Leptospira borgpetersenii str. 200801926 ctg7180000004432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259433 29 100.0 32 ............................. TGAGGAATCAGCAGGAGTTTTATGCATGGATC 259494 29 100.0 32 ............................. GCTACGCCCAAAAATCAATAGACGAGATTAAA 259555 29 100.0 32 ............................. AGATGCATCCTCCTTTCAACCGATCTCTTTAA 259616 29 100.0 32 ............................. GTGAGAATGTTGGGACCCTATTATCGGCCTTG 259677 29 100.0 32 ............................. TCAGTCGCAGAAACGAGAACGCATTCGTCCTG 259738 29 100.0 32 ............................. GCAACTCGCGCAATCATCGGAGCATTTCCAGA 259799 29 100.0 32 ............................. GTGAGAATGTTGGGACCCTATTATCGGCCTTG 259860 29 100.0 32 ............................. TCAGTCGCAGAAACGAGAACGCATTCGTCCTG 259921 29 100.0 32 ............................. GCAACTCGCGCAATCATCGGAGCATTTCCAGA 259982 29 96.6 32 ............................T AAAAGTTTATATCCTATTCGCCGTAGTAACAC 260043 29 96.6 32 ............................T CAAAGTCCCAGGCACATACATTTGGGTCGTTT 260104 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : CGAAAAAATAAAGGAACAGAGAAAAACGTACGGTGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25037-24584 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWJ02000033.1 Leptospira borgpetersenii str. 200801926 ctg7180000004446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25036 29 100.0 32 ............................. TAAAGAATGCTATTAGAACCTATATCGCCATC 24975 29 100.0 32 ............................. CGAAACCTGTGACGCTTGGGGACAGCATTCTA 24914 29 100.0 31 ............................. AAATTATTGAGATAAACAATGACCTCAAAAA 24854 29 100.0 32 ............................. GCTTAATTTTGAGAAGGGTTTCTCTTTTCGTA 24793 29 100.0 32 ............................. TAATTTTTTACAGGTTAAAAAATCATTCTCCT 24732 29 100.0 32 ............................. CTCAAGTAAAAGTTTTTTTCTGTATTTATTCT 24671 29 100.0 30 ............................. CCGCGTAAAATCCGAGACCGGCGGTCGTTG 24612 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGAGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAGAAGTATGATTTTGTGGTAAAGAAAACCTCCCGAGTCTTCCCACCGCCTCTCCCCTCCACCCAAAATCAGGGTGGGGCGTAAGTTTCACAGAGGATTTGTAGTAATTCCGACAGATTTATCTTCAGATCCAAGTATTTGTGGGTAAGGTTATGGGATCTTTCGGGTAACTCACTTTTCCCCACATGCGTGGGGTGAATGTACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCGGCGATTGATCAGACTGGCATTCGCGTGTTGTTGGTATACCGCACATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACACTTCCTATGAAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //