Array 1 124970-122723 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG796200.1 Methanobrevibacter oralis JMR01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 124969 30 100.0 34 .............................. GTGTAATGCATCACATATTCACTATCCATGTCAA 124905 30 100.0 36 .............................. ATACTAAATCCAGCAGTATCGAGTTTAAATATAGCA 124839 30 100.0 36 .............................. TAAGATAATTAAAATTAAATTAACGAATAACAATAC 124773 30 100.0 36 .............................. GATTATTATAGAGCATCAATGAAAAAATATGCTACA 124707 30 100.0 37 .............................. AATAATGTTATTAAGATTGTAACTAACCATTTTAAGA 124640 30 100.0 36 .............................. TTCCTTTGTAAGTTCATGTTCAACTTTATTTTCATC 124574 30 100.0 36 .............................. TTATTGACCATCTCTTACATATTTTAATTTTCTTAA 124508 30 100.0 36 .............................. ATGTATATCAAGAGGCAACTATTGGACAATTCACAT 124442 30 100.0 36 .............................. TTGCTTAAACATGCAAATAAATAATCAAACAATTGA 124376 30 100.0 36 .............................. TAAACCAAGAAAAAACAAACACCCCCAAAAAACACT 124310 30 100.0 36 .............................. CAACATAGTATAGATGATAAATATACTTATAATCAA 124244 30 100.0 37 .............................. AATTTAGATGGGACACATGGAGCAAGGTATAAATATT 124177 30 100.0 35 .............................. GATTGCTCAACACAAGACCCAGCGACAGCAAAAAA 124112 30 100.0 37 .............................. GGGCGTATCCTAGGATTTTTATCCCCCGGTAATAATA 124045 30 100.0 34 .............................. CAAAAAAGGAAAGTAGGTATGTTAAGACCTTCAA 123981 30 100.0 38 .............................. TAAAACTCATGAGTATTAATTTTGCCGGAACCTTTAAT 123913 30 100.0 36 .............................. TTATTGACCATCTCTTACATATTTTAATTTTCTTAA 123847 30 100.0 36 .............................. ATGTATATCAAGAGGCAACTATTGGACAATTCACAT 123781 30 100.0 36 .............................. TTGCTTAAACATGCAAATAAATAATCAAACAATTGA 123715 30 90.0 32 ...........................TGA CTGGTTATTAAGTTGGGCGTCATCTGAAACAT 123653 30 100.0 35 .............................. CTACACATTTCAAAAACAAAAAGCCACATAAGGGG 123588 30 100.0 37 .............................. CCCAATACTCGAAAAGATATCGATATACAAATAGAAA 123521 30 100.0 37 .............................. TAACTATAACCAGGTGGTGACGATGAAATCACAAGTA 123454 30 100.0 36 .............................. ATTGATTATAGCCTAGACACAAAACAAAGTAGAACA 123388 30 100.0 39 .............................. GATAAATCCTATCAATATTCTCTGATTTAAGAAAGTGCA 123319 30 100.0 38 .............................. CAGTGGAATAGGTGTAGTCTATTCCATCCTCACTCCCT 123251 30 100.0 36 .............................. TGCTGTACTTGTTGCAAGACAAATACGAGGTGTGAT 123185 30 100.0 37 .............................. AGCCTTGGTAAGCCTAGTAAGAAGAAGAGTGAGGATG 123118 30 100.0 37 .............................. GGATTATATTTAAAAAAAGAAATATTCTAACCTAATA 123051 30 100.0 37 .............................. CCTCAAGAGTGTTATTCACATTCTTCACCTTCTATAA 122984 30 100.0 35 .............................. CAATTCATCATCAGTAATAATCACATCATTACCAG 122919 30 100.0 37 .............................. ACACTCAACAAACCTTGCAACTGTACAGCTGTAACCT 122852 30 100.0 36 .............................. TAAATTTTCCCATCAATTTCAAGAAAAACATTGCTT 122786 30 96.7 5 ..................G........... CATGG Deletion [122752] 122751 29 73.3 0 ........T..-...TAA...TT..A.... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 98.9 35 ATGTTAATCAGACCAATTTGGGATTGAAAT # Left flank : ATATCTTCACCTGATGATTATTTAATTAAAAGTTTGGTCAATGGATTTTTAGAAACATTAGAAGTAAACTTAAATGGGCAAAAATTATTGGTTGAAAAAATTGAACTATTAAAAGAACCTAATTTTACACATAAAATGGAATTTAAGACGTTATCTCCAATAATAGCTAGAACTAAAAGGGAAATTGATGGAAACTTAAAAGAATGGGATTTAACTCCTGGAGATGAATTTTTTAAAGCTTTAGAGAAAAATCTTATAAAAAAATATAAAAAATATAATGAAATTGAGGAAACAGATAAAGAAATAAAAATTTATTCTGAGATGAAAAATGTTAAAAGAAAAAGAATAGCTATTGTTAAAGGACCTCAAACAACATACCATAGAGCATTTATGATGGATTTAATTCTTGAAGGTGATTTAAATTTGATTAAATTTGCTTATGATTGTGGATTTGGAGAAAAAAATAGTATAAGAGCCATAATAGCTGCTATTACTGCTGC # Right flank : AAAAAATAAAATTGGGAATAATTTTTATTCCCTTTCTTTTTTAAGTGATTGAACCATGTCAATCTTTTTAAGTTTTCTTGTTAATAGGTAATTAACAATTAATGACAGCACTATAGTTAAAATAAAGCTTAATATTATAGTTCTTGCAGTATAATGTGTTGGGTAGAAGAATGTATCACCAACGGTATCCCACATGAAGTCTAGAACTGCATATCCTGTTGGTACACCAAGTACATATCCAACAATAGATAATGCTAGGTTTTGTGTTAAGAATAGCTTTTGTAGGTTTTTAGTTTTAAAACCAAGTACCTTTAATGTTGCCATGTCTCGCTCAACTTCGGTAAATCCGAGAATTCCTAAACTATACAGTACAACTATTGATAAAACAATTGCAAATATTAATAATGCTCCAACCATTAAATTGGCAGTTTCTGTTAAATCATCCCAACTTTTTACCAAATCGTTTATGGAATTTGCACTAGCTACACCAGTTAAATTTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTAATCAGACCAATTTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 26522-24960 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG796208.1 Methanobrevibacter oralis JMR01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 26521 34 100.0 39 .................................. AGCTGATGAAGCTAGAATTGCTGAATTAGCGATAGATAA 26448 34 100.0 38 .................................. AGCACTTTATTATTTGATTCATTTTTTAATGAATTCGA 26376 34 100.0 38 .................................. AGCCCCATCAACCTCCAAGTTTCCCTAGGAGTCAACCG 26304 34 100.0 39 .................................. AGCATTTTTTGCTAATAGTCATAACCATTTGGTTTTAAA 26231 34 100.0 39 .................................. AGCTTGGCGACTTCTTCCTCGCTTAATTTTCCTACTATT 26158 34 100.0 38 .................................. AGCTCCTTGCTATTCATTTTTTCACCAACTACGCGGGG 26086 34 100.0 39 .................................. AGCTGAGGCGACAGGCGAGAAAAATAAACCCCATTTAAA 26013 34 100.0 39 .................................. AGCATGTCCAGTCTCAGATGGTCAACTGCAGAAATTTTT 25940 34 100.0 40 .................................. AGCCTTATCAGCGCATGTAATACCGTATTCGGCTAAAGAG 25866 34 100.0 39 .................................. AGCCCCCTTTCTTCTCTTCTATTCTTCTGTTCCTCCAGG 25793 34 100.0 39 .................................. GGCCCTTAAATTCCTTATTATTCGTTTTTTTCACCAACT 25720 34 100.0 38 .................................. GGCTTTATAGTGAAGAATATATAAGATTGGTTAATTTA 25648 34 100.0 39 .................................. GGCAATAAATAGGTTTTTGTTGTATATATATATTGCTAT 25575 34 100.0 38 .................................. GGTTAAAGTCTTTTAATAGCTTTTTTGAGGGTTTTGAG 25503 34 100.0 38 .................................. GGTGATGAATAAGATAATAAAATTTTCAAATTCTCTTT 25431 34 100.0 39 .................................. GGCCTAGAAGACGATATAGAATAACTAACTCAAACCCAA 25358 34 100.0 39 .................................. GGCTAATAAACCGATAATGAACCCTAAACTAGAATTGTT 25285 34 100.0 39 .................................. GGCAAAATCCATTGACTGTTAATATCTGTTCCTAATTCG 25212 34 100.0 40 .................................. GGCAGGAATAGGTTGGGATTTGGTTTTAACTGACATTCCT 25138 34 100.0 37 .................................. GGCCCCTATGGAGGACATCCTCCACACACACCATCAC 25067 34 100.0 40 .................................. GGAATCTTAGCAATATGTTTATCATAAACTTGTTAAAAAC 24993 34 76.5 0 ........AC..............T.GAT..AA. | ========== ====== ====== ====== ================================== ======================================== ================== 22 34 98.9 39 ATTGCAAAGTTAATTCCATAAAAACAAGGATTGT # Left flank : AAGGTAAAATTTTTATCAAAGAACCATGTAGAAAATTACTGATTAAAACAGTTCTTGATAAACTTAACAATGAAATTACATTTGAAGGATATAAAAATAACTATTCTAATTTTATAGCTATTGAATCACAACATATTGTGGAATTTTTACTTTACAATAAACAGTATAAGACGTTTTATCTAAGATGGTAAAATTGCGTAAACCTCAAAATATTTACTTAACAATAAAATTTTGTTAATTTTTACCTAAAATTTATTTTTAATAATTCTTTTTTAATTAATTAATTGTATATACTTTGGAATTATATTACTTGTTTTAGGTAAAATTTGTTGTTGATTTTATTTTTTAGCTATTTTTTAATAAAATTTTAATTAGAAACTTATTTATAGTACGCGTGCATATCTTTATATAGACTTTTACTTTTTTTATTTGCACATGAAAGTCTAAAATCACAGAGATTTGTGGTAGCTATTGTCTGAAATGATAGGATTTTCGACGCT # Right flank : ACTCATTAAATCAGTTTATATAATTTAAATTAAATGGGTAATGTTATCATAGTAAAAGATTTTTCTAATTCAAAGGGGTTTGTCAATAAATCCATTTTTCGTAATTTTTCTTGTTTCTTCTATTTTTAAGTTAATTTGGTTTTGGTTTTATTTTAGAGTTCTTTGGTTCTTTTATTTTTTTACATGTTTTTGATTGTTTTCAATCGTAATTTTTATTAAATTTGAATTTCAAAAATTAAATTGAACTTCCATTCTTTGGATTTCTATGTTTCATTCAAAAATGGTCGTTTATGATACGGCGTACAGTCTATCTTAATGATGGATTATTGGGCTCTTTCTTGCATTCTTCGCTCAATATGCTGTGTCTTTAAGATTAATTAGTCTTGTAAGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGTTAATTCCATAAAAACAAGGATTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //