Array 1 968951-969892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030211.1 Salmonella enterica strain SA20051528 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 968951 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 969012 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 969073 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 969134 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 969195 29 100.0 32 ............................. GATCGCTCATGATTGATCGAGCTGGTGGCCAC 969256 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 969317 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 969378 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 969439 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 969500 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 969561 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 969622 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 969683 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 969744 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 969805 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 969865 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 986439-987749 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030211.1 Salmonella enterica strain SA20051528 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 986439 29 100.0 32 ............................. CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG 986500 29 100.0 32 ............................. TGCTCACTAACGAGCGCCAGCAGGTGACGCTC 986561 29 100.0 32 ............................. AATTCTGACTGTGATGATGCCGGAACGCTGAT 986622 29 100.0 32 ............................. GGTCGTCGAAACCACTTGTTATGACCGGCATT 986683 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 986744 29 100.0 32 ............................. TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG 986805 29 100.0 32 ............................. CCGATTTTCAAGATGCGCGTAACGGTCATTAT 986866 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 986927 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 986988 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 987049 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTCAC 987110 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 987171 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 987232 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 987293 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 987354 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 987415 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 987476 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 987537 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 987598 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 987659 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 987720 29 93.1 0 A...........T................ | A [987746] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //