Array 1 360598-361032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHTQ010000001.1 Streptococcus pyogenes strain K6038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 360598 36 100.0 30 .................................... TTAGATAAGACAAAACTGTCCTCTTAATCG 360664 36 100.0 30 .................................... TACGCAGCTGAATACTTACAGAAAGATCTA 360730 36 100.0 30 .................................... CAATTAAGAGCGGATAAGAAAGGTACCCAC 360796 36 100.0 30 .................................... AAAAAAATACAAATCATAGATATAGAGATA 360862 36 100.0 30 .................................... ACTTATTGCAGATGACTTTAACATCAATAG 360928 36 100.0 30 .................................... CTTGATGTCGCAGAGATTAATATTAGGCGT 360994 36 97.2 0 ................................C... | T,TT [361023,361027] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTAGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCAATGGTAACTTGAGAGAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTTTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGAGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGACTAGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 103459-102966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHTQ010000004.1 Streptococcus pyogenes strain K6038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 103458 32 100.0 34 ................................ TAACTCATCTAGTGGCATTATCATATTAAATCTC 103392 32 100.0 33 ................................ TTGATAATCAACTCAGTCAGATTACTTTCTGGC 103327 32 100.0 35 ................................ TGTAATTTTGATTTGTTCCATATTTCTCACCTTTT 103260 32 100.0 33 ................................ TGCAACGTGAGCGATTTCAACAGCACTGGCTGG 103195 32 100.0 35 ................................ AAGTCAGCATATTCAAAGGCATACTTGATATATAC 103128 32 100.0 34 ................................ AAGTAATAGCCTCTACGGATATAGTATCGCTTAC 103062 32 100.0 33 ................................ TCCTCTCATCATATCTTTTAAATCTTTAACATC 102997 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.6 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGACCTCATTAAAAGAGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGTCTGTCTTGCTTTAGATACAATAAGGATAACCTTAGAGAGGAGTTGCTTATGACCTTATCAATCGTCTTAATCGCTTCCGTTTTTGCGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTCCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAGGACAATGACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAGACCTTAGCCTTCATTTTTGGGTTATCCACTATCTTTGTGATTTTAGGTTATGGGGCTGGTTTTTTGGGAAATATCCTTTATGCGGTATGGTTTCGGTCCTTCCTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //