Array 1 63924-63284 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAD01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4505 NODE_6_length_177367_cov_121.529158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63923 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 63862 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63801 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63740 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63679 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63618 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63557 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63496 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63435 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63374 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63313 29 96.6 0 A............................ | A [63286] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81670-80056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAD01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4505 NODE_6_length_177367_cov_121.529158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81669 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 81608 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 81547 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 81486 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 81425 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 81364 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 81303 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 81242 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 81181 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 81120 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 81059 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 80998 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 80937 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 80876 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 80815 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 80754 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 80693 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 80632 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 80571 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 80510 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 80449 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 80388 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 80327 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 80266 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 80205 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80144 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80083 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //