Array 1 51151-52336 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSN01000028.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4371 NODE_28_length_58574_cov_2.11729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51151 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51212 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51273 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51334 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51395 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51456 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51517 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51578 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51639 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51700 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51761 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51822 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51883 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51944 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52005 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52066 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52127 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52188 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52249 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52309 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21669-20053 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSN01000041.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4371 NODE_41_length_32175_cov_2.10368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21668 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 21607 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 21546 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 21485 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 21424 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 21363 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 21302 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 21241 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 21180 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 21119 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 21058 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 20997 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 20936 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 20875 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 20814 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 20753 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 20692 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 20631 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 20570 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 20509 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 20448 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 20387 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 20326 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 20265 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 20204 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 20143 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 20082 29 100.0 0 ............................. | A [20055] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //