Array 1 36915-37661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOC010000008.1 Providencia rettgeri strain 586mA NODE_8_length_129398_cov_25.137503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36915 28 100.0 32 ............................ AATTCGAAAGTACCACCGTAAGGCATGGCATC 36975 28 100.0 32 ............................ GCAATCACTGAGCGAATCTTCTTGAGTACGTT 37035 28 100.0 32 ............................ TACTGAGCCGGACGAAGTAAAAGACGCGCCAA 37095 28 100.0 32 ............................ GAGAAGCTGCGCAACAAATCAGTGAGGTGTAT 37155 28 100.0 32 ............................ ATTTGCTCACAAAATCATAGTAATCAGACCAA 37215 28 100.0 32 ............................ GGGTCAGGCTACGACAGGTTTTTATGGTGACA 37275 28 100.0 32 ............................ AGATTTAGTGGGGATTTCAGGCTTATCTAAGT 37335 28 100.0 32 ............................ TATTTTTAAGGTGACCTTATGGATTTTGTTTC 37395 28 100.0 32 ............................ ATAAGGTTGCAAATCCCCGCAAAATGAACACG 37455 28 100.0 31 ............................ TATCACTCCGCGTGAATATGACTTGCATCCA 37514 28 100.0 32 ............................ TCAGAGGTTTGGGGTATCACATTGGACTGGGG 37574 28 100.0 32 ............................ TCTTCATTGCATCCCTGCGAGTTAAATTAATC 37634 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTAACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAATGCCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAACTAGTACATTGTTTTTCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46299-46808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOC010000008.1 Providencia rettgeri strain 586mA NODE_8_length_129398_cov_25.137503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46299 28 100.0 32 ............................ GTGAATTATCCCGCTTTCAACAGCAAGAAATC 46359 28 100.0 32 ............................ CATACCCCATGTATCGCATATGGTTATGTTTA 46419 28 100.0 32 ............................ TCTCGATGTAATTGTCTTGAATGGATACCGAT 46479 28 100.0 32 ............................ GGGTAGTGATGATGTTGTTAGGCCAACTAAAG 46539 28 100.0 32 ............................ TTTATAAAAATCAGATGTATACATTCTTGATG 46599 28 100.0 32 ............................ GAGTCAGTGACCTTAAAGATTGATCCGTCGGT 46659 28 100.0 33 ............................ GATAGACTTCGCCGCATCTTCTGCGAGCTTTGC 46720 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 46780 28 89.3 0 ...T......A.........T....... | G [46806] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAAGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAATACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGCTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTTATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATTCCTGAAAAATAGATCGGATAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //