Array 1 298359-300156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEN010000004.1 Escherichia coli strain GU756, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298359 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 298420 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 298481 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 298542 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 298603 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 298664 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 298725 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 298786 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 298847 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 298908 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 298969 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 299030 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 299091 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 299152 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 299213 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 299274 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 299335 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 299396 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 299457 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 299518 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 299579 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 299640 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 299701 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 299762 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 299823 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 299884 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 299945 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 300006 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 300067 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 300128 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 325857-327227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGEN010000004.1 Escherichia coli strain GU756, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325857 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 325918 29 96.6 32 A............................ ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 325979 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 326040 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 326101 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 326162 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 326223 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 326284 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 326345 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 326406 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 326467 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 326528 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 326589 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 326650 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 326711 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 326772 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 326833 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 326894 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 326955 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 327016 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 327077 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 327138 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 327199 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //