Array 1 155253-155891 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797966.1 Rothia sp. HMSC072B03 Scaffold75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155253 29 100.0 32 ............................. GTATCCGGGCTGGTTAGAGGCGGTGCTGTAGT 155314 29 100.0 32 ............................. AGCCCTCGTTGAGTAATGCTGCCGCCAATAAG 155375 29 100.0 32 ............................. GCCTGGCTCTCCTCCATCACCGGCGAGCGCCT 155436 29 100.0 32 ............................. CATTGCTAGACTCACCACTGTGACCAGTCTTA 155497 29 100.0 32 ............................. GGTGGCGACCCCTTCAACCCCCATGACGCCAT 155558 29 100.0 32 ............................. ACCTCTTCGGTCATGTACTCACTCAGGTTCTC 155619 29 100.0 32 ............................. GTCTCCAGAACGACGATTCACCGATTAACGAC 155680 29 96.6 32 .C........................... GAATCACAGAAGCCGAACGCGACTGGATTGTA 155741 29 96.6 32 .C........................... CGCCTACTCTTACCTCTGATGAGGCACGGTTA 155802 29 96.6 32 .C........................... GACGGGTTCGGCGGTGGCGAAGGCATCCGGCA 155863 29 89.7 0 .C...................A.....C. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGTATGCGCGGGGGTGAGCTC # Left flank : CAGAAAGCCGGACTCAACCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGCCAGCTGGAATACAAGGCCAGCTGGTACGGCTCGCAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCGGCCTGCGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATTCGTGCGGAGGCTGTGCGGATGTATGAGGCGCAACTCGCCCCCGGCATGGGGGAGAGTCTAAACGGACGCGGAGTTACTGACTCTGATGCTGCTGTTTCGGTGGTGTTGGGGGATGCGGCGTTGGATGCGTCAAGACCAGCCGCCATGGGCGGCGGGTCACCGTAGGCAAGTAATTGTCTACTCATCCCCTTATATACGTGTGGAAAGTGAATAGTTTTTAGACTTCTGCTAGGCATCATGCCTTGTGGTTATGT # Right flank : CCTTCTCCTCGCCGCCGACAATAACCTTGGGCAGTTTTCCCCGTATATGCGGGGACGTGTGTGGGGATGAGCCCGACAGACACGCTTATATGTTGGATTTTGGTCAAATTATTGTATATTTGTCCTGTACCCAATTTCCGTGCATGCCCGAGAAAGCAGCATCTCAGCCGACGTTGGCTGTTCATTATAGACTGCATCACACAGTGCTTACATCGAATTTGGCTCGAGTTGTGAAGTCAATGGGGGATCTTCAAGAGGCGGAGCGACTGTTCAGAGAGGCCATCGCGATGGACCCAGAGTTCGCCGAATACCACCAGGATTTCGCGTCGTTCTTGAGCGATATGGGCTGTTTTTGAGGAAGCAGCGGTAGAGGCAGGACGCACGGTTGAGCTCGATCCGAGCATAGATGTTCAGGTAGCTCTCAACGACCTCCAAGCTCGTTTTCCGAACGACGAACTTATTAACGAGGCCGTACACCTGAACTCGAATACCGAATGACT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCGCGGGGGTGAGCTC # Alternate repeat : GCGTTCCCCGTATGCGCGGGGGTGAGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 216623-218725 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797970.1 Rothia sp. HMSC072B03 Scaffold154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216623 29 100.0 32 ............................. TGACGGAGCAGCAGTCTCGTTGGAGGGATAAG 216684 29 100.0 32 ............................. AACACCGTCAATGTAATCATCACCACTCCAAG 216745 29 100.0 32 ............................. CCCCGTATCCAGGCGCTGTAGGTAGACAAGCG 216806 29 100.0 32 ............................. GCTTGTGCGCTTTCGTGATTGTTTTCAGATTA 216867 29 100.0 32 ............................. ATTCCAACGCTGTATCTGAGCTCATGTATGAG 216928 29 100.0 32 ............................. GCGGTCGCCATTCGCGGCAGATAGGTGCCGCC 216989 29 100.0 32 ............................. AAGGCGTAAATTATGCGCATGACTCGACAGAT 217050 29 100.0 32 ............................. TCCAGCGGCACCTCTGCACCGTAACGCTCTTC 217111 29 100.0 32 ............................. GAGATAAAGGGCGCAATGGAGCACCGAATCAG 217172 29 100.0 32 ............................. AGCAGCGGGTAGTGGGCGTTATCCTGCTGGTC 217233 29 100.0 32 ............................. CACGGCCCACATTATCAAGAGTGGGCTTTAGC 217294 29 100.0 32 ............................. ATGTCGCCGACAATCTTCACGCCGTCATTAAA 217355 29 100.0 32 ............................. GCGTTCGGTCTATGGGTGGTGCGTTCTGAGAC 217416 29 100.0 32 ............................. GCCACCGACGATAAGGCCAACAACCACCAGAA 217477 29 100.0 32 ............................. GATAGCGCCGCCAATCTTGGTAGACATATCCT 217538 29 100.0 32 ............................. ACTGTTACGGACATTATCGGTTCCGTTTTCCG 217599 29 100.0 32 ............................. AAGTCCACTCATTAGCCACGAAGTAGCTAACC 217660 29 96.6 32 ............................A GCAACTGATTACGCAGGCGCTTCTTTTTGACC 217721 29 100.0 32 ............................. CTTTCGCATGATGCGAGTGACGATAAGATTAA 217782 29 100.0 32 ............................. CACATATTCGCGCTGAGTACCGACGGACGGTA 217843 29 100.0 32 ............................. CGCGCATTGAGAAATGTCATCGCCGCCGGTAT 217904 29 100.0 32 ............................. CAGCGCGTGCGTACTTGCCGGTGGGTAGAATC 217965 29 100.0 32 ............................. GAGGAGTGAGAGGATGAGTCCGAAGATGAAGA 218026 29 100.0 32 ............................. TCGACCAATGGCCAGGCTATCCCGGGCGTGGA 218087 29 100.0 32 ............................. GTGAACCGCCAGGCCGCGAATATTATCCGCCT 218148 29 100.0 32 ............................. GCCGTCTTGCGCCACATGGCCGCCTCATGCTG 218209 29 100.0 32 ............................. GCGCTCGAACCTGGTGTGACATCCCTCACTAA 218270 29 100.0 32 ............................. CGGCGACGCCAGGCACCGGCGAAGCGGCCGCG 218331 29 100.0 32 ............................. AAGACTGTCTCGCTGTGGACGAGTCGCGGCGG 218392 29 100.0 32 ............................. GGGTGCAACGCCCTAGAAATCAGCCTAACCGG 218453 29 100.0 32 ............................. TGTCAGAGAACACAATGAATTATAGGGGTTTT 218514 29 100.0 32 ............................. AGCTGAAGCGCCGTGGTGTTTCGCTTCCTTCT 218575 29 100.0 32 ............................. AACTCTTGACTCAACACAACCTGGGATTTCTT 218636 29 100.0 32 ............................. GACCCGAACTCATGCATGAGATTTTTGATGAG 218697 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.9 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : AGATGCTTTTGTGGGATGAATACACGGGAGGCACTGCGGCGCGTGCGAACTTTTCTGGGGATGAGTCATGATTGTGATTGTGTTGTCCGCTTGTCCGGTAAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGGGTGTTTGTGGGACGTGTGAGTGCCAGGATTCGTGAGAAGTTGTGGGCGCGTGTGCTGGAGTCGGGTGGTACTGGTCGGGCGACTATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGAGTGAATAATGCGGACTGGGAGCCAATCGATTTTGAGGGTGTGAAGCTGATTTATCGGCCGGTGGTTCGTAAGGTTGTGCCGAAATCTGGGTGGAGTAAGGCGAGTAGGTATCGCCGTGCTCGTCGTGGTTAGGGGCTACTGTTTATCGTGTATTCTGGAGTCAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAACCCCATGTCAGCAAGC # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGATGTTCCCCGCGCGAGCGGGGATGAGCCGGACGGTCTCATCTCCCGAGCCGAGCTGAAGCAATGTTCCCCGCGCGAGCGGGGATGAGCCGCGGCAGCCATGCGCGGAAGATAGGTGCCGCCGATGTTCCCCGCGCGAGCGGGGATGAGCCGCCATGAAGACCCGCGCCGCGCTCGCCCTGGACATGTTCCCCGCGCGAGCGGGGATGAGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGTTCCCCGCGCGAGCGGGGATGAGCCGCCTCCGGCGACTATGCACGGCGTGCCGGTGGTATGTTCCCCGCGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218830-219041 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797970.1 Rothia sp. HMSC072B03 Scaffold154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218830 29 100.0 32 ............................. GACGGTCTCATCTCCCGAGCCGAGCTGAAGCA 218891 29 100.0 32 ............................. CGGCAGCCATGCGCGGAAGATAGGTGCCGCCG 218952 29 100.0 32 ............................. CCATGAAGACCCGCGCCGCGCTCGCCCTGGAC 219013 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GATGTTCCCCGCGCGAGCGGGGATGAGCCGAAGACTGTCTCGCTGTGGACGAGTCGCGGCGGATGTTCCCCGCGCGAGCGGGGATGAGCCGGGGTGCAACGCCCTAGAAATCAGCCTAACCGGATGTTCCCCGCGCGAGCGGGGATGAGCCGTGTCAGAGAACACAATGAATTATAGGGGTTTTATGTTCCCCGCGCGAGCGGGGATGAGCCGAGCTGAAGCGCCGTGGTGTTTCGCTTCCTTCTATGTTCCCCGCGCGAGCGGGGATGAGCCGAACTCTTGACTCAACACAACCTGGGATTTCTTATGTTCCCCGCGCGAGCGGGGATGAGCCGGACCCGAACTCATGCATGAGATTTTTGATGAGATGTTCCCCGCGCGAGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAG # Right flank : GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGTTCCCCGCGCGAGCGGGGATGAGCCGCCTCCGGCGACTATGCACGGCGTGCCGGTGGTATGTTCCCCGCGCGAGCGGGGATGAGCCGCGCGCCTGCGCCTGCTCAATAGTGGACGCGGCATGTTCCCCGCGCGAGCGGGGATGAGCCGTAAAATTGAGGACGTTCTTCCGATTGCGGCTCATGTTCCCCGCGCGAGCGGGGATGAGCCGAACCCTCTAGCGACTATCGTGAAGAACGCCGAATGTTCCCCGCGCGAGCGGGGATGAGTCGTGGGACGAAGAGACCAAGCGATCTTTGATTGAATGTTCCCCGCGCGAGCGGGGATGAGCCGGTTGCCCTTAAATACGGTGTACGAAGACATGTATGTTCCCCGCGCGAGCGGGGATGAGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 219147-220762 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797970.1 Rothia sp. HMSC072B03 Scaffold154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219147 29 100.0 32 ............................. CCTCCGGCGACTATGCACGGCGTGCCGGTGGT 219208 29 100.0 32 ............................. CGCGCCTGCGCCTGCTCAATAGTGGACGCGGC 219269 29 100.0 32 ............................. TAAAATTGAGGACGTTCTTCCGATTGCGGCTC 219330 29 100.0 32 ............................. AACCCTCTAGCGACTATCGTGAAGAACGCCGA 219391 29 96.6 32 ..........................T.. TGGGACGAAGAGACCAAGCGATCTTTGATTGA 219452 29 100.0 32 ............................. GTTGCCCTTAAATACGGTGTACGAAGACATGT 219513 29 100.0 32 ............................. TCGCGGCCAATCGTCGCGAGACGCGAGCGCGT 219574 29 100.0 32 ............................. TCCGTGTAAGCAGACATGATTTTTCCTTATAT 219635 29 100.0 32 ............................. TCTGGTACACATCTAGCGCGGGTTTCCCTGAC 219696 29 100.0 32 ............................. CTGGCGATGGTGGAGACAGGGTTTTTGGCGTA 219757 29 100.0 32 ............................. GCGCGGGTGGAGGCTTGGAGCATCTCGGCGGC 219818 29 100.0 32 ............................. AGCTGTGCAAGCACCAGCTAGCGGATTGCAAG 219879 29 96.6 32 ..........T.................. GGCCGGGCGTTGGTGAGGGATTGGCGCGACCA 219940 29 93.1 32 T...........................T GGCGACGACTGGTCCGGCCGCGTCGGACTGGT 220001 29 89.7 32 ...........AGT............... ACCTTACCCCAGAAATCTGCAAGGGCAGTAGG 220062 29 89.7 32 ........T.......T...........C TCGGCTAACATCATGGTCGGTGAGGTGCGCGG 220123 29 89.7 32 G...........A...............C TGGAGCAACTGGGTACGTTGACCGCCCAGATG 220184 29 93.1 32 G..G......................... CGGAAGCTGCGGCTGAGGGCGAAGTGTACGTC 220245 29 96.6 32 G............................ ACCGCCAAAGGATGCCGCTACCCCTCAGCCTC 220306 29 96.6 32 G............................ TGCGGGGCGTAGTGGGTGAAACAGCGCGGTCC 220367 29 93.1 32 G.........T.................. TCGATTGTGATTTCTGGTGAGCCTGGTGATGG 220428 29 89.7 32 G..C........A................ CAGAAACCGCCGGGGTTACCGGGGTTAATTTT 220489 29 89.7 32 G..C........................T GACTTCAAGGCTGATGAGATGCGTGACCTGGG 220550 29 96.6 32 ............................C ACTGAAGCGCCCGACCTGACTAAGTTCAAGTT 220611 29 96.6 32 G............................ CAGGACGGCGAAACCCTGGGCATTCTCATCCC C [220615] 220673 29 89.7 32 G...........T...............T ACGCTGAGTGGCGTGCAGCAGCTGACGGTTCA 220734 29 89.7 0 G...........T...............C | ========== ====== ====== ====== ============================= ================================ ================== 27 29 95.8 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GCGAGCGGGGATGAGCCGGACCCGAACTCATGCATGAGATTTTTGATGAGATGTTCCCCGCGCGAGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGATGTTCCCCGCGCGAGCGGGGATGAGCCGGACGGTCTCATCTCCCGAGCCGAGCTGAAGCAATGTTCCCCGCGCGAGCGGGGATGAGCCGCGGCAGCCATGCGCGGAAGATAGGTGCCGCCGATGTTCCCCGCGCGAGCGGGGATGAGCCGCCATGAAGACCCGCGCCGCGCTCGCCCTGGACATGTTCCCCGCGCGAGCGGGGATGAGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAC # Right flank : CTATATCAAGGGCAATATTGAAAGGCTCTCAACGTATTCCCCGCACTCGCGGGGCACAGGTAAAGCCCCTCGGCCCGCAGCAGTAAGCTACAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGCGCCCGAAAACTAGGGAACCGCCCCCTACGCCACCATCGCCTCCTTGGCCGCGGTGCCGTTGCGGGTCCACAGCAGGAACGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACGTTCGCAAAGTTACCCTGAGTCAGCGCCTTCACGCACTGCACGGTGTTGTACAGAGCCCAGAACTGCCACTGCATCGTCAGCTTCAAGGCGTTCAGAATGTTGGCCGACAGGGACAGTCCAAACACCACGGTCGTGATCCAGAACAGGAAGGTCATCTGGCCGCGGTAGCCGATATAGTTCGCAGTCAGGGAGAACGCGAACGAACCCGTCACAATGCCGGCGATAATCAGCTGACCCT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //