Array 1 1278-868 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000556.1 Streptomyces sp. SID5473 SID5473.c556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 1277 28 100.0 33 ............................ CAACGCCACCGCGGCCATTACTGCGTACCTGGC 1216 28 100.0 49 ............................ CTGCGGACCTGCGGACCTGCGGACCTGCGGATCCAGCGGCTCGTCTCCT 1139 28 100.0 33 ............................ ACGGTGTGATGGACCATCACTCCGTGCACCGGG 1078 28 100.0 33 ............................ CCGCGGGCGACCCGCCGCCCGAGGCCGGGACGC 1017 28 96.4 33 ...........A................ TCGCACTCAGCCTGAGGCGGGGAGGCCGGAAGC 956 28 92.9 33 ...........AC............... CGATTCAAGGGCGGGCAGGTCGATGTCGCCCCA 895 28 92.9 0 ...........A........A....... | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 97.5 36 GTGCTCCCCGCGGGCGCGGGGATGGTCC # Left flank : CCAGCGCGCCCGATTCCACGACGAGATCGACGATCCGCCGCCCGGAGAACGTCTCGCGAACCCCCTCCGCCCCCGCCAGCGCGACGGCCTGCCCGCCCCCACCGGCAACGGCGGCGAGAACGAGGGAACCCCGCAGCAGGAGCCGCCGCCCGGGATCCGACGGAAGGAGAGTCATGAGGCCACCTCGTCTCGGCCGCCCGGGGAATCCCGGGCACCTTCGGTTCACTGCCGAGTGTGGTGCTGCGGGGGGAGCACGGGGATCCGTCACACCCCTGACCGCCCCCGGAGTTCACCCCCTGAGGGGCATCGGGGGAGATGAAGCCGCGGAGGTACGGAACGCTCCGCCCGGCAGGGGAGGCCCTCGTATGATCGCCGGGGTGGGGCGCGGCCGGGAGGAGGGGGACTTGGGCAAGCTGATGTACCTTCAGCCAGTTTTGCCGGAGTCGGTGAAGTTGTATGGGAGGGGCGCTGAGCGCTGCCAAAGGGGCAGGTCAGGGAGT # Right flank : CCAGTTCGACCTGGTGCGCGGCCTGACCGACTAGTACTCCCTGCTACCCGCAGGGATCCCCGCGCCGCCCCCACAACCCCCACCCCCAAGCGGTAGCGTCTCCGTGCCGCCCACGGCCACCTGGGCGGCGCGCGTGTGTTCAATCCGCCGTGATCCCCCCGTGCAGGAGACCCCGTGGACCGAGTCAGAACCCGACGCACGCCCCTCCTGATCGCCACCCTCGCCACCCTCTCCGCCCTCACCGCCGGGACCTTGTCCCCGGCCACCGCCGCCCCGGCCCCGCCCGCGCCCACCACCGAGGCCCTGCGGCCCGTCTCGCCCCCGCCCGCGAGCAACTCCGTCTCGACCGCGCCCGTCACCGCCGACGGCGACGGCATCGAGACCGCGCGCACCTCCCGGCCCGTCGCACCCGGCATGACCCTCACCTCCTACGACCGCCTCGAAGCCGACAAATGGCTCCGCGTCGACACCCTCTCCGTCGAACTCGACGGCCACGGCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2908-2027 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000557.1 Streptomyces sp. SID5473 SID5473.c557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2907 29 100.0 32 ............................. CATTCGAGAAACGGCGGCGCCCCCTTCCCCTT 2846 29 100.0 32 ............................. GGAGTCGAGAGCGCGCCCATGCCCATCGGTGT 2785 29 100.0 32 ............................. AGTCCCGCCCGGCGTCGGCCGGGCGGGACCTG 2724 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 2663 29 100.0 32 ............................. CAGTTGATGGAGCAGTACGACGGGGTGGCGAA 2602 29 100.0 32 ............................. CCGCCGTAGTCCTTCGCGTTCAGCGACCGGGG 2541 29 100.0 32 ............................. GGGGCGACCCGCGACCAAGGCACCCTGGCCAA 2480 29 100.0 32 ............................. CGCTCCATCGACGCCAGCGGCGACGAAGTCGG 2419 29 100.0 32 ............................. CCTCGTTGAGCCCTCAGCCGTCGAGCCGGAGA 2358 29 100.0 32 ............................. GGCGGCGCCGGAGCGGAGGCGGCGCCAGGCGG 2297 29 100.0 32 ............................. ACTGCCGAGGAGGCACCGGATGAGCGCCACGC 2236 29 100.0 32 ............................. CGGCCAAGTTCAGGCCCGCAACGAACCTCCCT 2175 29 100.0 32 ............................. CACGGCTCGCCGTCGACGGACGCGACCCGGAC 2114 29 96.6 32 ...........C................. TGGCCCACCCCGGCCTCTTCAGCGGCCACGGC 2053 27 86.2 0 ...........--.........C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCGCGAACGTCCTGACTGCGGACGGAACCTTCTGCGGCGTGATCGACTTCGGTGACCTCTGTGCGGGCGACCCGGCCGGGGATCTTGCCGCAGCGTGGATCCTGCTCCCGGATGATGCCTTCGACCGCTTCCATGCTGCCTACCGGCCCACCCTGGACGCGGCGACCCTGCGACGTGCCCGTGGTTGCGCGGTGATGCGTGCCCTCTCCGGCATCCTCATCGGAGACGCCGGCGTCCACGGCCGTCCCGGCGGCAAGGCCACGTGGGGCCCGCCTGCCCGCACCTCTCTGGAGCGCCTCCTCGCGACGGCCCACCGCTGAGAAGTGTGGGTGCGCAGGTACCGCAGCGGAGATAGGAGAATGCGGGGCTTTGTATGATCGGCGCGGTCCGCTGAAGGGGAAGGGAAGTTGCTGATGCGCTCTATGTCGCCTATGCCGGAGTCGGTGAAGTTGCATCAGGAGCGCGTTGAGCGCTGACAAAGGACCAGTTCAGCGAGT # Right flank : ACCCCATGCCATGGAACCCCGGGCGATTCCAAAGACGTCGACGCCGTGGCCCCTCAGACGGCCACGAGCCCGCAGACCGCATAATCGAACTCCCATTCCTCACCCCCTCCACAGTTCACCTCGGGTGCGCGCCCACCGCCATCCGTTCCGTTATTCTGGGCCCGCCGCGGTGGCCATCATCCGCACCCGCTCAAGTAAATCGCTCAAGTAAACGAAAATATGATTTTGGGCCGTCAATTCCTGAGGGGCGACTTGCTACCCGACCACCACCTGCCCCGCCCCGACGGTCACGGCGTCCGCCTGCCCCTGTCGTCAAGCCAGCGCGAGATCTGGTTCGCCCAGCTCAGGAACGGGAACAGCGCCGCCTACCGGATCGGCGAGTATCTCGAAATCCACGGGCCCGTACAGGCGCGGTTACTGGACGCCGCGCTCCGCAGAGCCGTAGCGGAATCCGAACCGCTCAATGTTCGATTCGGGACCGAAGCCGGGGTGCCGTGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5228-4282 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000557.1 Streptomyces sp. SID5473 SID5473.c557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5227 29 82.8 32 TA...AG.T.................... GCTGGATGGCGCCGCATCGGCGGTGCCCTGCG A [5218] 5165 29 100.0 32 ............................. GGCCGCCCCCTCGACTCCCGCGGTCTGTCCAA 5104 29 100.0 33 ............................. GACGATGTTCGAAGCCGGGGACGAAGTAGAGAT 5042 29 100.0 32 ............................. GGTGTTGACGTTGGTCGACTGGCGAAGGCTCC 4981 29 100.0 32 ............................. TGCCCACACTTGAGGTAAGCAAGCTCGTGGGG 4920 29 100.0 32 ............................. TACGTACGCGACGGCGGCCGGGGCGGCTGGCG 4859 29 100.0 32 ............................. CGTGCGGGGGATGTCCGACCCCGGGCGTACGG 4798 29 100.0 32 ............................. CATCCCCGCTTCCGCCACCGAGACGACGCAGG 4737 29 100.0 32 ............................. GTAGCCGTCCATGTAGCCGGGCATGCCCGTGC 4676 29 100.0 32 ............................. GGCGGTCAGGTGCGGTCGGGGAATCCGATGCT 4615 29 100.0 32 ............................. CGGCCCCCGGCCTTCCGGCCTCGGAGCCGTCC 4554 29 100.0 32 ............................. GTGAACGCCGCCGTCTGGCCGTCGTTCTCCAG 4493 29 100.0 32 ............................. GCGGTGTTCACGTCGATCCCGACCACGAACCG 4432 29 100.0 32 ............................. CCGAGCTTCAGCCTCTTCATACGGCCCGAGCT 4371 29 100.0 32 ............................. AAGTCCTCGCCGCCCGCGAAGAAGCCGTCCGC 4310 29 86.2 0 .....................GA..G..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.1 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : | # Right flank : GCTGTTCATCCTCGGCGCCAACGCGCTGTGGTCACGCGCAGGCAAAGACACCGCGCCCGACGCCTGGCGGCGTGGGGTCGCCTTCATACTCGATGGCCTGCGGGCTGGCTCGGCCCACCCGCTTCCCGTTGCTCCGCTGACGCCGCAACAGCTCTACGAGATCATGGGCGGCATCATCGGCACACGGCCAGGCACCGGCCAGTAGGGGCGTGCCCGTCAGGCCGCGAACTCTCGGTCTCGTTGGTTGGCGGCCCGATGCCCCTACTAGGCTCGGCCTGCATGACTCACACCGAGATGACGATCACCGCCGAGCTGATTCGGGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGAACGGCCTATCGAGCTCGGCGCGCGCGGCTGGGACAACCAACTCTGGCGGCTCGGCGACGACCTCGCCGTACGGCTGCCCTGGGCGACCGAGTCCGCGGACGGACTTTTGCGCAAGGAACACACCTGGTTGCCCGCACTCGCCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 481-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000558.1 Streptomyces sp. SID5473 SID5473.c558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 480 29 100.0 32 ............................. TCCGGTGATCCGCATGACTGGCGGTCTGGCCG 419 29 100.0 32 ............................. CGGCCTGCGTCACACAAAACCGCAGGTCAAAG 358 29 100.0 33 ............................. CAGCGGGAGAAGGGAGGGGACTCGATGTGCTTG 296 29 100.0 32 ............................. CTGGCCGAGCAGCCCGCCCCGGCGCCGGTCTG 235 29 100.0 32 ............................. CCGGCCCTGACCGCTGAGCAGGCCCCCGGGAT 174 29 100.0 32 ............................. CCCGCCGACCTCCCCGCCTCCTGGTCCGGCGA 113 29 100.0 32 ............................. GAGTGGCTCCAGCTCCACACCGCCGAAGTCCT 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGTCCCCGGAGGAGGCGGCGGTCCGGGAGACCCGGGAGGAAGCCGGCCTGACGGTCACCGGCCGGGCACGGATCGGATCCCGTACCCACCCCCTGACCGGCCGCCACATTCTCTACATCGCCTGCACCACCGCATCCGGCACCGCCCATGTCACCGCGCCACGGGAGATCACCCACACCCGGTGGATCCCACCCCAACTGCTCGATACCTATGCCCCCGGTACGTACGAACCAGTCCGCCACCACCTCGGACTCCACACCTGACGAACGGACACCCCACACCCCGCTATGGGCCTCTGTCTGGCCGTGCATCTCGGGTGGTTCAGTGAGGAAGGGTGTGCGAGGGAGGAGTGGTGCGCGGCGGGCCTTTGTATGATCGGCGCGTTCCGCTGAAGGGGGAGCAGGACTTGGAGCCGTGCCCTATGTCGCTTATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCTTTGAGCGCTGACAAAGTGCCAGGTCAGGAAGT # Right flank : CCCGAGGTCCGCCTAGCTAGCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5773-4953 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000558.1 Streptomyces sp. SID5473 SID5473.c558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5772 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 5711 29 100.0 32 ............................. TTCGGCCGTAAAGGGCATTTGTTCCTGACGTC 5650 29 100.0 32 ............................. ACGGTGGTGGCCTCCCGGCCGGGCGGCGCGAC 5589 29 100.0 32 ............................. AGCGGGACCAGCCTCCGAGATGCCGTGGACCG 5528 29 100.0 32 ............................. CGGCCCCGGGCGAACCCCGGCGTCGCGGTGGG 5467 29 96.6 32 .................C........... CCGGTCGCGCCGGGGAGACTCGTCGGGGTGCT 5406 29 100.0 32 ............................. CGGCCGCGCCGGAGGGCGCGGCATTTGGCGCT 5345 29 100.0 32 ............................. CTGGGCGGCGACCGGCTGACCGCCGGGACGCA 5284 29 100.0 32 ............................. AAGTTGACCGAGTGCGTCATGATGGAGGCATG 5223 29 96.6 32 ............G................ CAGATGCCCCGCCCGGCCCCGGAGGCCGAGGT 5162 29 82.8 28 .........A...A.......TC.C.... ACTCCCGTCCCAGCCGGGAGACGAACTT 5105 29 82.8 32 .C.......A.G.A..........T.... GAGGGTCGCCTCCCCACGCCCACCATGGCGGT 5044 29 75.9 32 ...T............T.......CCAGG CCGGACGAGCCCAGCGCCACCACGGCCACCAA 4983 29 82.8 0 ...T.T.......A.......T.A..... | AC [4958] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGTACAGCGAAGACGCCTACGGCTACACGTGGCTGCTGCTGCGCCGCGCCCCGGATGACGTGGCGTCCCTGGTGAACGACCTCCATGCGGTGAACACCCTGCTGGAGGAGTCGGGCTTCGGCCCCCACCTGCTGTGCTCCCTGATCACGTTCCACACCCCGGAAGCCCGCGCGCTGGCGCTGGTGTACCTGTACAAGAGGGGCACGTTCTACCCGTTCGCCCCGATCCCGGGCGGCGGTGAACGAAGGGACAACGCGCTGGAGTTGGAGGTGAGGTCGCTGCTGTCGGAGGATTTGAGGATGGAGGGGGAGCTGAACAGATGGTTTCCGGTGTGGGGGGCGCCGGGGTTGGAGGGGTGAGGGGTGTGGGGGTTTGTATGATCGGCGCGTTCTGGAGGAGGGGGAGCAGGACTTGGAGGCGTGCCCTATGTCGCTGATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCCTTGAGCGCTGACAAAGTGCCAGGTCGGGAAG # Right flank : CGGCAGGAGTTCCGTCCTGCTCCTGCATCACTACCCGGGACCGAAGTCATCCCTGTACTCACGCGGGGATCTCCCGGGTACCGTTCGTAAGGGACGATTGAGAATCAGGAGACTGGTATGGCGCGTTGGAGTGATTACACCACCGGTCAGCGCATCAAGATCCTCCGAGGAAAGACCCTCCGGCAAACCGACCTTGCCGAGTTGACGGGGCTGTCGCTCCCCACGGTGCAGCAGGCAGAACAAGACAAGCGACTAACTCTGCAGACTCTCCTCCTGATCGCCAACGCCCTGGGTACGGATACCTCGGTACTGCTCGGCCAGCAGGGCCCTCGCAGGGGAATGGAGCAGGATGATCGTGCAACGGTCAAAGCCCTCGCACGTGCGGTGCACGACACTTCCGCTGGCCTTTTCCCCGACAACGTCACGGCACCACCGCTCCCCGGACTCGCAGAGACCGCGAAGCAGTGCTGGGATCTCTATTGGGACGGAAAGTACGTGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5396-4452 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000584.1 Streptomyces sp. SID5473 SID5473.c584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5395 29 100.0 32 ............................. ACCGAGCAGAGGTACCCGGCTCACAAGGTCGT 5334 29 100.0 32 ............................. CGGCCTGTCATGTCCCGGAGGCGGCCGTCCGC 5273 29 100.0 32 ............................. GGTGGTGGTCGAACTGGAGCGAATGCGTGGGA 5212 29 100.0 32 ............................. TCGCCCTCGAATTCCTCCAGGACGTCGCTGCC 5151 29 100.0 32 ............................. CCCGTCTACACCGTCGTCGTTCTCGCCCTGGC 5090 29 100.0 32 ............................. AACTCTGACGACTCGACCACGAAGAAGACCGC 5029 29 100.0 32 ............................. ATCACCTATTGGGCGTTGTCGATCCGGTACCT 4968 29 100.0 32 ............................. CGGAAACGGGTGTGCTGGGTCGGGCCCTCCGC 4907 29 100.0 32 ............................. TGGGCAATCCACTGCGGGTGCTCCGCCCATTC 4846 29 100.0 32 ............................. GATCTGGACCGGCTCCCGCTGGGAGAGGGAGG 4785 29 100.0 32 ............................. CACCAATGGGTGGTGGCGGGCGGGGTGTCGGG 4724 29 100.0 32 ............................. CCGCGGTTGTCACCGCTCGGCCCCGCTCATCT 4663 29 100.0 32 ............................. TGCATCGGCTGGGCGTCGACCTCGGCCCAGGT 4602 29 100.0 32 ............................. GACCTTGAGGAGTACGGCGCCCTCGTCCGCAA 4541 29 96.6 32 ...................A......... GGCGGACGCGGGTCATCAGGGTCAAGGCTCAT 4480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCCAGGGCGCCCGAGTCAAGGAGCTTGCGATACACCTCGTCCCGCGCGGAACCGTCCAGGCCGGAGGCAGTCACTTCCGATGCTTGCCGTCCCCTTCGGGAGCGCTTCCATCGGGGCTGGGCGGCTCCTGTGGCGGGGTCCACGGCTGGCCCGGGAGGTTTTCACCAGCGCCGCCGCCTTCTCCGCCGCCCCCGTCGCCCGCGTTGCGTGTGATCGGCTCGGCCATCGCGACCTCCAAGGCTGGCCGTAGGTAGTCAGCCTGGACTCTAGGGAAGTAGAGAGCATGCGAACAGCCCGAATTGGGCCGTTTGACGGATTCCCTCGGATGGGTGAGGAGGAACCGATATCGTCGGTGGCCGGAGCCGAGGGAGGGGGTTTGGTTTGCTGCACGATCCAGACCAACCAGAGCGGTTTTCGTCGTTTTCGACAGATTTGCCGGAGTCGGCAAAGTTGCGTGAGAACTGGTTCCCCGGCCGATGAAGCAGCAGGTCAGGAAGT # Right flank : GTCAACGCGACCTCGGCCGCGTGCGGGTAGCCGAAACACCCATCGGCGCATCGGCAGAACCGGAAATGCTCGGCGCTTCTCTGGCCGCACTGCTGCCCACTCGATTCTTGACAAGATCCGGTTCCGCCCCGGCGTCCAGATACGCGCTCTCACATGTACGACCTCGCCTGCGAGCCAGCCGTCGTTAGGCTCCACCCATGACCGACTACGTACAGGTTTCAACTGCAACACCCCTACGGGAACAGGCCGTCGAGCTTGCTCAAGGCGCGATCAAAGGACGTCTAGCAGCCGGCACCCAGGTCATTGGGCCTGTCGGCTCCGTGTTCTGGCACCTGGGGGAGTTTGGCGAAGGTACCGAATGGCGGCTTCTGCTCACCACGACGACGGACAGGTACCCCCAGCTTGAGCAGTACCTGTTGGAACACCACCCTTGGGACAACCCGGAGCTGCTCGCCACACCGATCGTCCGAGGTGCGCAACGGTGTTTGGAGTGGATTGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8801-8528 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000584.1 Streptomyces sp. SID5473 SID5473.c584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8800 29 100.0 32 ............................. GAGGTGGAGCTCTGGGCGCTGGCGCACGCTGG 8739 29 100.0 32 ............................. CCGCCGAGCCGCGGGTAGCGGCGGCTGACCGA 8678 29 100.0 32 ............................. CGGCGCACGTCAGACAGGGAGTAGTGGGGTCC 8617 29 100.0 32 ............................. AGGACCGTGTGTCATGGTCGGTCGCCTTCGGA 8556 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCCCCGGTCGAGCGTCTGGGAGGTCTCCGCGGTCACGAGGCCCTCTCCTTCGGAGTGAGTGACGGCGAAGCCCCACGGTTGACGCGGCGCCGTCCCGCCGGCGACGCACCGAGGACCCGCCGGCAGGCCATGGCACACCGGATGGGCTCCGCGGCTTCGCTGCCACGGGGCGCAAGATTGGTGAGCGGGACAGTAGCGACCAGGTTCGCTCAGCGGAAGACCTCGTCCAGAATCCGGTCGGGGGTATACCAACGCGGCCCGTTTGATGGCTGTTTGCCGAGCCTTCACCACGACCCCCCGGAGACTCCCCTTCCGCATCGGCGGGCCCATTTCGGCGGTGGGGGGAGGGGCCGGTCAGTAGGGTCGGGGTGTGGTGGAGCGGAGGGGGGAGTCGAGGTGTGTCGACCGGTATGCGTTGCGATGGTTTGGCACGTTTCGCCGGAGTCGGTGAAGTTGCTTCAGAACGGCGCGGGCGGGTGAGAAAGCGGCAGGTCGGAGA # Right flank : GCCACGCCCACACCCATCGCCGTCCCGCCGCCAACGGAGGCGGCATCGGCCTCTCCCCCTGGGATGAGCCGTCCGGCGTGAGCTGTACTGATAGCCCTGGAGATACGAACCGCAACCGCAACCGCAAGCCGAGTCCGCCTCCCTGTTCAGCCGTTCCCATCTCAGGAGATCGGTTCCACGCCGTACAGTCGGACGCGTGCACTCAGCGGTGAACAGAGCCCACGCCGGGCTGGTTACGGTTACCGGAAGTTCGGGCCAAGTAGGAGCGGCCCTGGCTGAGGCACTGGACACGGCCGGCTGGGTGGTCCGCGGCGTGGACCGGATTCCCGGCCGCTGGACGAGCGTCGTCGGAGACCTGCGAAACCAGCCGGTGCGACTGGCCGCATTGCAGTCGGCCGATGCCCTGGTCCATAGTGCCGCGCTGCACGCCCCACATGTCGGCCGCCTGGCCGATGAAGAGTTCCGAGCCGTGAACGTAGATGCGACCGCGGGCCTGCTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2302-2695 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000757.1 Streptomyces sp. SID5473 SID5473.c757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2302 29 100.0 32 ............................. ATCGTTGGCGAGTACGTGTTCGACCTCGTGGG 2363 29 100.0 32 ............................. CGGCACCCCCCTGCGGGAGGTTGCTCTATGTG 2424 29 100.0 32 ............................. CGTCACCATGTCCGTAGGAGACCACGGCGCCG 2485 29 100.0 32 ............................. GCTATGCGCCTGTACCCGCGGTTCTTGATGAG 2546 29 96.6 32 ..............C.............. GGCACCACGGAGATGCAGGGGATCCTCACGAC 2607 29 86.2 32 ............TAC.........A.... GAGATCGCCGGACGGTACGGGCCGGAGAGTCT 2668 28 89.7 0 .............AC..........-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : AGCGCTGGGGCTGCCGTCTGGAGTCCTATCTCACCGACCCCCGGGTGGAACCGGATATGAACAAGTGGCAGATCCAACTCGCCTTCCGCCTCGCCGACTGACCCCGGCACCCGGCCCGATCTCTTGGCCTCCGGCACGGGTCGGGGTCGGGGGCGAGGTCCGGCGTCCGGCGTCCGGCGTCCGGCGTCCGGGAGAACGCGAAGGACCCCCGTCCAGTCACTGGACGGGGGTCCTTCTTCACGTGGCGGCGCCAGGATTCGAACCTGGGTAGGCTAAGCCGACGGATTTACAGACCTCTGGCGCCTGCACTCGCAAGGCTCCCTTGAGCAGGCACTTTCCCGGGCACCCGGTGCTCCGGTTCCTGCTCCGTCCACACGTCGTCCTGATCATGCTCTCGGTCGCGCTCTGGACCGCAGGCTTCACGAGAGGGAGAAATGTCCGTTCTTGGCAAAGTGGGTAAAATCCAGGGTCGCGCCAACTAACGTCCCTGGTCAGCTCCT # Right flank : CGCACGCTTGCTCCCAGCACCAAGTCACCCAGGGACGATCCGGCTCGTGAAACCATCACCACGCAGCCGCTCGTACGCCTGCATCACGATGTCAGGCACTTCCTGCCTGATCATGAACCCCTGATCGGGGTAGATCAGCAACCTCTGAAGGGCTCCCACGAGCATGTCGATAACCAGGCGCTCATCCCCGATGGAGGCAAGGTAGTCCTCGAAGACCATCGGCGCGGACGCGCTGACGACGTCCACCTCGGGCCAGAGCTGGCGCGCCGTGGCATACGCGCGCCGCTCTTCGTACGGCTTGCTGACCAGCAGCACGGATGACACGTCAACACCGTTGTCTTCCAGCAAAGCCTTTGAGAATCGGATGTTCTCTCCAGAGTTGCGCGCCCGTGGTTCGACCAGCACGGAGGAGTCGGGCACACCAAGCTCAAGAGCGCGGTCTCGGTAGTGGACAGCTTCGCCCCGCGGCATACGCGCCGCCGTGGTGGGGCTGGTTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73425-77512 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000595.1 Streptomyces sp. SID5473 SID5473.c595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73425 28 100.0 33 ............................ GCCAACGCGATGGTCTCGTGGCTGAAGGGCCTG 73486 28 100.0 33 ............................ TCTGGGCAGTTTTTGATGTGCGGATGGTGGGCG 73547 28 100.0 33 ............................ ACGAGGCCGTCACCCTCAGCCTGGCCTACGACG 73608 28 100.0 33 ............................ TCGAAGGCGGCGTTCATCGCCACGAGCGGCGCG 73669 28 100.0 33 ............................ AGGGCGTGGATCCGGGCGTCGAGCCCTTCGGCG 73730 28 100.0 33 ............................ GCGGCGCACTCGGGCTGTACGGGGCAGGTGCGG 73791 28 100.0 33 ............................ TACGCGGCGAGCCCTTCGGCCTGCTCGCGAGCG 73852 28 100.0 33 ............................ GTGACGTGGATGTACACCCACCGTGGCGAGGCG 73913 28 100.0 33 ............................ TCGACGGCCAGACCGCCAGTCATGCGGATCACG 73974 28 100.0 33 ............................ CAGCCTGTGCCAGGCGGTGAGGGTGATCTCGCG 74035 28 100.0 33 ............................ CCAGGTGTCGAGCGCGAACCGTTCGACAGTGAG 74096 28 100.0 33 ............................ ACACCGGCGCCGAAGTCCACAGTCACCACCACG 74157 28 100.0 33 ............................ GTCGAGGCGGGCCAGGGCCGCCTCGGCGATGCG 74218 28 100.0 33 ............................ ACGGGCGGGAGCCCTCGGCAACCACCGGCCGCG 74279 28 100.0 33 ............................ ACCGCATCCGCGCCGCGTCGGCCCGCGCCCTTG 74340 28 100.0 33 ............................ ACGGAGACACCGCATGACCAGCACCATGGAATG 74401 28 100.0 33 ............................ TCGAGTGGACCATCGCCCGGGCCGCACAGATGG 74462 28 100.0 33 ............................ GCACGTGGCACGGCGGTGAAGGACGGGTGGGAG 74523 28 100.0 33 ............................ AGGCCGAGGTACTCGGCCCGGGCGGCGATGATG 74584 28 100.0 33 ............................ TCCGCCGCGTTCTCCGGGGGCAGCGGGGCCCGG 74645 28 100.0 33 ............................ CCGCCCGCCGAGCCCGTGTCGGCGGCGGACCCG 74706 28 100.0 33 ............................ GCCTTGTGGATGTGCTCACGGATCCGGCCCTCG 74767 28 100.0 33 ............................ GTGCACTACCTGGGCACCGAATACCGCAGCCGG 74828 28 100.0 33 ............................ GCACTGCGCACTGCTGAGTCGGCCAAGCAGCCG 74889 28 100.0 33 ............................ ACACAGGGCGAGCTGGCGCTCTACCCGCCGGAG 74950 28 96.4 33 ........................C... GCGCCGCAGGAGGGGCAGGGTGCGGCGGCGGGG 75011 28 100.0 33 ............................ TCGAACGCCGGCCTTCGTGCTGTCCCCCTGACG 75072 28 100.0 33 ............................ AACCCGGCCTGCTCCGCCCAGACCAGGGGCCAG 75133 28 100.0 33 ............................ CGGGTGCGGTCCCGGGGCATGGGTGCTCCGGGG 75194 28 100.0 33 ............................ ACTTTCGGGCCGGTCGTCGTTAACTACGGCCCG 75255 28 100.0 33 ............................ GAGCCTCCCATGGTCGAGATCTACGACAACAAG 75316 28 100.0 33 ............................ CCCTTGAAACCGCAGACCCCGACCGGCCCCGCG 75377 28 100.0 33 ............................ GGCTGATGGAGCTTTCCCACCCCCAGGCGCTGG 75438 28 100.0 33 ............................ CACAGCTACCAGGACTAACACACGCACAGGGCG 75499 28 100.0 33 ............................ TTGGCTCCAAGGGAGTGCCCAGGGGGGAACGAG 75560 28 100.0 33 ............................ TCCCGCCGCCGACTGGACCAGTACGTGGAGCAG 75621 28 100.0 32 ............................ ACCTGCCGGTCGGCCGAGCCGAGGGCCCTGGC 75681 28 100.0 32 ............................ GTGCGCTCCGCTGTGCTGGTTGCGCGCTGCGA 75741 28 100.0 32 ............................ GTTATGGATGTCAGCAGGAACCGCCACCGGAG 75801 28 100.0 32 ............................ CTCGATGGTGATGTACGTGTGGTCGACCCATC 75861 28 100.0 32 ............................ CCCTCTCAAAGCGGGACATCCGCCGGGCCGCG 75921 28 100.0 32 ............................ GAGCCCGCACCAGTGACCGACCCTACCCCCGC 75981 28 100.0 32 ............................ CAGCAGTCCGGAGAGCGCCGCGCTCGGGGTGG 76041 28 100.0 32 ............................ CAGCCGCAGGCCTTGTTCCGCATGCTCCCGTT 76101 28 100.0 32 ............................ CCCGCCTACGAGTTCGGGACGGCGGCGCACAC 76161 28 100.0 32 ............................ GACAGGGGGGACAAGGTCGATGAGCTTGCTGC 76221 28 96.4 32 .................A.......... CGCAGAACCATGACCGGGGGATGGTCCAGCGC 76281 28 100.0 32 ............................ GCTGGAAGGTGACCGATCTGCGGGCGCGCCTG 76341 28 100.0 32 ............................ GTGCGGCTCGATGAGGCCAACGTCCGCACCGA 76401 28 100.0 32 ............................ TCGACGTTGACGACGACAAGGTGACCCGCGTG 76461 28 96.4 32 .............A.............. TCCTCACCGCCGATGGTGATCTCCCCCGGGGT 76521 28 100.0 32 ............................ GGGTCCGGTACGCCGATGGTCTGGCCGGGGAC 76581 28 100.0 32 ............................ GCGGCGGTGAGGGCCCGTACGGTGCCCTCATG G [76602] 76642 28 100.0 32 ............................ ACCCTCGCCCGTATCCAGGCCGGGCTCGACAA 76702 28 96.4 33 ...........................A GGCTGTCGACCGTGAGAACCTCGACGTGCTCTG 76763 28 100.0 32 ............................ CCATTCAGGCACTGCCCGAAACGGGGTCGTCA 76823 28 100.0 32 ............................ AGTTCCGCCGGTGGACACCGGAGGAGGTCGTC 76883 28 100.0 33 ............................ GGCGACCGTGGCCATCTCCGACGACCCGGATGC 76944 28 100.0 32 ............................ GTCATGTCGATGTCTTTCTTCGGCGTCCCGCT 77004 28 100.0 32 ............................ TTCTTGGCGATGCGCTTCATGCCGTTGATGGA 77064 28 100.0 33 ............................ TGGTCGGCGATCTCGTCGGAGATGGCGGCTTCC 77125 28 100.0 32 ............................ AGAGACTCCGAGCCCATGAACATGCTCGTGCC 77185 28 100.0 32 ............................ CACTGCTGGCCGAGAGGGAGGGTTCATGACCG 77245 28 96.4 32 ....................T....... GTTCCGGCGATCAGACCCATGGCCGACGCTTC 77305 28 100.0 32 ............................ GCGGGAACCAGTGAGCAAGAAACCCGGCGGGA 77365 28 100.0 32 ............................ CTGGGCACGTCGCCGCGGGACAACGCCGCCGC 77425 28 100.0 32 ............................ CAGGTGGCCGACTTCCAGGCCACGACCGCGAA 77485 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.7 33 GTCCTCCCCACCGCGTGGGGGTGTTCCG # Left flank : AAACCCCGATACCTTCCCGATATCGTGCAGCCCGGCGCACAAGCCGACCAGGCTCCGCGCCCGCTCCGGCTCACCGGCCAGACCCAAGCCCCGCTCAATAGTCCTTCGCTGGCCGTCCGACAAGTAGACATCCCACAAATGCAGCGCCATGGCAGCGGCGTCAGCCAAGTGCCTGACAAGCGGGTATGGAGGCAGCCCCGGATCCAGCCCTCGCGACTTCGCCCAAATCGACTCATCCGCCACAGCCCTGGGCACACCCATTCCCGCACAACCCCTCACGCGATCGCCAGCCAATGAGTCAAGCAGACCGCACCGACAACGGGCCCCATCCACACCACAGACCGAAGCATTCCGCCCCTCACAGCACCCGCCATCACAACCACCAGCCCCCGCGATACCCCACGGGATCCGCAGCTACAGTGAGGAAACTGCATCCGGGAGGCACAATGCGATCAGCAAAGGCAAAGCAAAGCCACTCCTAACGTGCAGGTCAGAAAGGG # Right flank : GTTTTCCTGCTGCTCTCCTCACCGCGTACGGACACGGACCAGCCCACACCGCACCCCCATCCTCTGCATAGAGCCAAGAGAGTGACGACGGGCAGCGGGATTCCCCTGGGACTTATCTGGGACTTCCGGCTGCATCAACGGCCATGACCATGAAACAACCGAAAGAACATTTGTGCAGGTCAGCTGCGCGGTACCAGCAAACACGGCAGGTCACAGACCTGACTGGTCTCTTCCGCGACAACTGATCAGGACGATCCGGCTCGGTGCACTACTCCTTGTCGCACCACCACCGCAGGAAGGGACGCAACCGCCTACGGCACTGAGGGAATGACGGCTACAGGCGCCCTTCACGCAGAGTGAAGACCCGGCTCGAACGACGGCCGGCACCGAACCCCGGCGCTCGCCTGAGCCCTCTTGCGCTTGACGCTCATATGACGCTCGTGACCCAGAATCCGCCGCAACCGCGCTCACCAAATAGCCTCTGACCTGCACTTATCTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5966-5394 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIK01000831.1 Streptomyces sp. SID5473 SID5473.c831, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5965 30 100.0 31 .............................. CCGGACGTGCGTCTCGTACTTGGCGTACGTC 5904 30 96.7 31 .............................A TGACCATCGACCCCGACACCATCCCCGCCAC 5843 28 93.3 31 ...........--................. TCCGGACCTCGTCGAGGTCCCAAGGGTTCCG 5784 28 90.0 31 ...........--................T TCGACGGCAAGGCCGCCCGGGACGGGATGCT 5725 30 96.7 31 .............A................ ACGTCCGGAAGGAGCTCGTGGACGTCGCCGT 5664 30 96.7 31 .....G........................ GGCGGTGTCTCACCGGGCGCCGATGCCGCGG 5603 30 76.7 31 ......G....CCC.......C...C...T GGATGCCGCTCCTGGTCGGGACGCCCGCCCA 5542 30 86.7 31 T..........CCC................ ACATTGCGGCACTCCGGGGCGCACGGCTCGT 5481 29 86.7 31 ...T........C-...............C GCGCACCTCTGCCGTTCGGTCACGGGGCTTG 5421 28 83.3 0 ...........CC-.......C...-.... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 90.7 31 GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Left flank : CCTTGCCGATGTCGTGTACGGCGGCCAGCCAGACGGTCAGCAGCCGGGCGTCGTCCGCGCCGCCGGGCAGGGCGTCACCGACCAGTTTCCGGACGTTGGCGGGCAGCCAGTGGTCCCAGAGCAGCCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAGCCTTCGGTGTCCCGATCGTGCTTCGCCCATACGGACCGCACCGGTCCGGTAAGGCGCTCCCCAAGACCCATGCGTGTCTTTCCCGTTGAGTGCTGTGCGAGTGCTCAGGGAGATACCTACCGTCAAAGCGGTGGCCATGGCAGCAGATCGGAAAAGATGAGCGCGTTTGTGGCTGATCCGCTGGAATCGGGGAATGGAGACGCGCGCCACGTCTAGGATGCGAGCCCGCGCTGCCGGGTGGGTGGGGGTGTCTGGGTGGAGATGTCGGGTGCGGTGAAGTTGATGGGAAGTGGGTGGGGCGGGGGGTAAGGGCGCAGGTCAGGGAGT # Right flank : CTCGGGACGATCGGCGCCGGCACCCGGCGTCACCGCTCCCCGCCCCCCGCGGGGCTCCCGCCCCGGAGGCGGTCGATCAGGGGTGAACTCCCCCTCCCCGTACGGCCGTACGGGCTCCGCCCGGCTCCTCCTGCGCCACGGACCCCGATTCGTGCGCCGACGGCTTCGGGGGCCTAAGCTCTGCCGTGTGCTCGACGTGAGGCGTATGTGGGTGCTCTGCGCTGTGGTCGCAGGAGGATCGGTCACCGCGGCGGCCGCCCGGCTGGGGTACACGCCGTCCGCCGTCAGCCAGCAGGTGGCGGCGCTGGAGCGGCAGACCGGGACGGCCCTGCTGGAGCGGGTCGGACGTGGGGTGCGGCCCACCGCCGCCGGGCGGTTGCTCGCCGAGCACGCCGTGCTCATCGGGCGGCAGATCGCCGAGGCGGAGACCGCGCTCGCAGATCTGTGCGCCGGACGGACCGGACGGCTCGTCGTGCGGTACGCGCCCGGTTCCGGCGCCG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //