Array 1 1346905-1345425 **** Predicted by CRISPRDetect 2.4 *** >NZ_SADY01000001.1 Paenibacillus sp. SDF0028 NODE_1_length_1483854_cov_48.1582_ID_8356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1346904 30 100.0 36 .............................. ATATGTGGCCACGTCCAATGGCACGTATACATTCCG 1346838 30 100.0 36 .............................. ACAGATTGCATTTTACATTGTGACAGGAGGAAGATT 1346772 30 100.0 36 .............................. ATGGAAGCCAAACAAAGAGCCAGATATAGATGGTTA 1346706 30 100.0 36 .............................. ATCTTAAAAATGGACAGCGGTATACGGTAGAAGTAA 1346640 30 100.0 35 .............................. GCTTCTGCCCAACCTGTCTTTTCAGAATCTATGAG 1346575 30 100.0 36 .............................. TTGTAGAAACGTTCAAATTCCGCTGAGAAGCTCAAG 1346509 30 100.0 37 .............................. CACGCACGCAGCTCCCGCCATTCAACCTTGTATCCAT 1346442 30 100.0 35 .............................. ACGAGAAGGAAAGCCGCATGCATTAGTAATCGGTG 1346377 30 100.0 35 .............................. CCTGCAAGCCGCTTGTACTCAGTTCCATCTCCGTT 1346312 30 100.0 34 .............................. ATCATTACGGATATAGCAAAAGGCAATGTATCTA 1346248 30 100.0 36 .............................. AGCGAAGTGTGTCCGAGTATCTTCTGTAGGGAAAAC 1346182 30 100.0 36 .............................. TATTTTGCGTCCGATTGGATTTATGACGATTGTTCC 1346116 30 100.0 36 .............................. AAAACAGCAAGCCCAGCGATCATAGATGTGGCTGTA 1346050 30 100.0 37 .............................. TTGCAAAGCGTTATATATGCCTTTCAGGATGTTATAG 1345983 30 100.0 36 .............................. CCCAGAAAATACTTGTGAACGGAAAAGCTAAGAAAT 1345917 30 100.0 36 .............................. ACTTTCTACCCCTTTCTAAAAGAGTAAGACAGCCAA 1345851 30 100.0 36 .............................. TCTGTCAGCGTTACATACTGTAAGTCAGCTGTCGCC 1345785 30 100.0 37 .............................. ATGAGGCTCGATACAAGCCCACACGCTGCCGTCAGGC 1345718 30 100.0 36 .............................. TACCAAATTACGATATAAACCTTATTCATGACTGCT 1345652 30 96.7 36 ........A..................... GGAGATAGACGCTGGAATAAAACGCTAATGCAAAAG 1345586 30 93.3 35 ..A.....A..................... AATTCATACTGGTCGTCGGTCATCTCTTCAAGCAT 1345521 30 96.7 37 ........A..................... GTATTATATAGCGACAGGGCGCAGAACGGCTCCGTTG 1345454 30 96.7 0 ..................G........... | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.3 36 GTTTGACAGTAACATGAGATGTATTGAAAT # Left flank : ACCGTTTATGCCTTTTCTTCTTAAAGAACGGAGATGAGCGAGCATGGGAAAGAATTATAACTATGTCATTTTAGTTTATGATATTGGTGAGAAGCGAGTAGGACGCGTATTTAAAATATGCAAAAAATATCTGGTACATTTTCAGAAATCAGTGTTTCGTGGAGCAATTACCTGCGAATTTATTGAAATTGCGAGGTGAATTGAAGAAGGCAATTGATAAAGAATCTGATTTTGTAGCAATTTTCAAAATGACTGGTGACTATGTGTTTGATGAAGAGATTATTGGGGTTAGATTGAACAACTCTGAGTCTTTACTACTCTAATTTTCCCAACCTCTTTCGTACATAAAATTGTTCGATCCTTTGTGCAGCAAGGGATTAGATCGATTTTTGACACGTTGAAAGAATTATGCACTCCCGGTTGGGAAACAAATAGCGAAAACCGCGTGGCTGTAGTAAAATTGACTTATTCAAAGATTAGAAAACCCTGATTTGACTAGG # Right flank : GGATCAAAGCTTTTTGGATTTTCCATGTCTGCTAGTTTCTAACGTACCTATGAGAATTGAAACTTACGATGGCTAAATGGGGATAGCTAATATGGCGCAATTAGGAGTGGTTCGACTTGTAGAAAGAGTTAGAAACAGGTATCTGTCATTTCTCAATGCTTCAGCCAATAAACTCGAAATAAGCACAGAAAAATTAATAAAAGCATATAATCTAGTATAAAAGCCGTCTAAAAACAAAGGAGCGAGATAATTCTTGCTCCTTTTCATGTTTACCTCTTAATTTCATTAAATTTACACGAGCTACACAATCATGGTAAAATATAGGTGGTTAATCGAAAGGAGGAGGGATGATATTGGACGCAACAATCATTAAAACAATTGGAGAGCTAGTCCAAAATACAAGGCGCTCATTAAATATGACGATTACTCAATTGTCAGAATTATCAGGTGTCCCTAGAGGGACGATATCAAGAATCGAGAACGGCGAAGTAAAGCGTCCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1358250-1356451 **** Predicted by CRISPRDetect 2.4 *** >NZ_SADY01000001.1 Paenibacillus sp. SDF0028 NODE_1_length_1483854_cov_48.1582_ID_8356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1358249 30 96.7 35 .......T...................... AAGCATAAGGAAGCAAGGAACCCATAAGAGTTATC 1358184 30 96.7 36 .......T...................... TACCATGGCAATGATACGTTAAACGACTGCTCCAGA 1358118 30 96.7 37 .......T...................... TATTTCCATGGATAATATTCTTGCTGCACAGTTGACC 1358051 30 96.7 36 .......T...................... AATGTATGGTTATAACTGACCTGCACGGTTGACCAT 1357985 30 96.7 36 .......T...................... AGAGAAAGAGAAAGAAATACGAGAGTGCAGACATTG 1357919 30 96.7 36 .......T...................... ACCGTTACTTGTGCAGTACTTTGAATGGGCAAGTAA 1357853 30 96.7 36 .......T...................... TTTATACGAACGTATTTTTGTGGGACAATTATATTT 1357787 30 96.7 36 .......T...................... TGCAGATAATCAGCATGACCGCACAAAACTTTTTCA 1357721 30 96.7 36 .......T...................... GCAACAGATGCAGCATGTCCGGCTTCTATTATCGCA 1357655 30 96.7 35 .......T...................... TGGGATGGATAAACTACTTTGTCCCTGTAGGGATT 1357590 30 96.7 36 .......T...................... GCAACAGATGCAGCATGTCCAGACGAAATGATAGAA 1357524 30 96.7 37 .......T...................... TAATAACCCGGTACATTCTTAAGGCTTTCTAAGGCAT 1357457 30 96.7 36 .......T...................... GCTCGTAGTCCGAACAGCACAGATCGATGCGCGTAT 1357391 30 100.0 36 .............................. CAAGGCGGCGGGGGAAATCCCGAAGCAGGCTATCAG 1357325 30 100.0 36 .............................. TTTAAGCTTGGAATATGAACACTAGGACGCTGTACA 1357259 30 100.0 36 .............................. CTAAGAGGCTTAGCAAGATTCACCGGATGCTCAAAG 1357193 30 100.0 35 .............................. GGTAATAGCCAGCGATAAAATTTATAATTTTGATC 1357128 30 100.0 36 .............................. ATTGTAAGTGCCTTAGTTCCAAGATTGGACTGAACA 1357062 30 100.0 36 .............................. TATTTATGAACCCATTGAACATACTTTCTATCCCTG 1356996 30 100.0 36 .............................. ACTCCCCAGTTTCGCGATTTACGACCTGTCATCGTA 1356930 30 100.0 36 .............................. TTTGATGCTAGCGCCGAAAGCGTTGAACGTCATGCA 1356864 30 100.0 35 .............................. AGTTCTCGAATGTCTCTATCTTGACTTGCTGAACC 1356799 30 100.0 35 .............................. AACATTGGAACATCTAGGACAATCCTTAGCACGAA 1356734 30 100.0 36 .............................. ATGTCCCTTCTGCGTGACTGCATATAGAGCGCATCG 1356668 30 100.0 35 .............................. GTTGAAGAAGCAGCACAGCATTACCGTGAGTCAGA 1356603 30 100.0 29 .............................. GTCCGTACCCAATTGCCTGAACTTTCATC 1356544 30 96.7 35 ..................G........... AGGTCTTCGAACATCGTACCGAAGAGTTGAACGCC 1356479 29 90.0 0 .......................CA-.... | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 98.0 36 GTTGAACAGTAACATTAGATGTATTGAAAT # Left flank : GTCCGCCATCATGGCTGCGATGGCAAGCGGACAACTAGCGAACGGAGCTGTAGAAGCTGCCCATGCCAGACAGCTTGAAATGAATCTTCTCGCTTACCGTACCGCCCTGCTTGGTGCTGCTGCATTTCTGCTTCTTGGCTTATGTGTCGCCTTCCGAATCAAGGACAGCGACGCCGCCGCAACCATGAAATCTCGGCAATCTTCTAATCCTGCGACGAAGTCTGTAAAGGCGGAAGGATAGGTAATAAAAGATCACATATCTATGACCAATTATTGGAATTTTATGCTTCAATATTCTATCTTTATTAAAGAGATAGTCTGTTTTTTCCCAACCGTCGTGGAGAAGTGATAGAGGTAATATCCAAGTAGAGTAAAGGTTTAGAACAATTTTGACGAGTATTCAGAAAATTTCGTTTTAGGTTGGGAAAATTATAGTGAAACCCGCGCGGTTGTAGTAAAATTGCTATATTGATGTTTTGAAAAAGCCTGATTTATCTAGG # Right flank : TAAAAAAAAAGCGCCACCTATACTGTAGCGCATTCTCTATTAAACAGTTTTCATAGATGTTTTGCTGTTGAAGGATATTAGTTTCAAAGTTCTATATAAAGACAAAATGATTCTCCCCAAAGGTTGTAAATAGAGGTACTATAGTAATAGGAAAATCACACCATGTGTTACTGTTGGTTTTAGAACATAATTTAAAGTCAAAAATTTCAATGCATCTCACGCTACAGTTAAATAATGAATTATTTAATTTGCTTTCATTCTATTTGCTCTACTATATCGTTTCATTACTAGAGTCTGCAATAGGTAATAATATTAAATCTACTTAGGAGAGGGGAACGATATGTACTTTGAATTAAAGGCGACGGTCATGCTGAAGCAATCAGGACATTATTTAGAATGGCCTGAGCGCATAAGTGCTTGGATTGGACGGGCCAGCCTGCACGATCCTGTGTTGAAACATTCACATTATGAAACCGCATACAAGCATTATGTGTATGGAG # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATTAGATGTATTGAAAT # Alternate repeat : GTTGAACTGTAACATTAGATGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1377679-1377314 **** Predicted by CRISPRDetect 2.4 *** >NZ_SADY01000001.1 Paenibacillus sp. SDF0028 NODE_1_length_1483854_cov_48.1582_ID_8356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1377678 28 100.0 40 ............................ CAAAATAGAAAGTCACCATATGTTCCTTCCCATATGTCGC 1377610 28 100.0 39 ............................ ATGGTCAGACGCTATACTTTGGCACCGCAAACGGCCAGC 1377543 28 100.0 38 ............................ TGCTTGCGCTGCAGCTTGTACAAGCCATTTTTTCTCGT 1377477 28 96.4 41 .......................A.... TTCGTCCTGCATGTCCAATGTTCGGAAAATGGGAGCTTCGT 1377408 28 100.0 40 ............................ GAGGAACATAATCAATGATTTGATTGCCTACTCTAACCGT 1377340 27 92.9 0 ....................-..C.... | ========== ====== ====== ====== ============================ ========================================= ================== 6 28 98.2 40 TTTGAACGTACCTATGAGGAATTGAAAT # Left flank : AGGGATATTCGTGGTAACGGATAAGAGAGTTTATTTTGCTTATAAAATCGTTGCGAGTTACGGGTTCAAGCAAATCCTATACCATGATATTCTGTCTGTGTCGGTTGATGGAGGTATATCTGGTCGACTTAAGATCGAAACAAAAGCACATAATACTCTAAATCTGAATTCAATCAACGTTAAGAGAGTAAAAGATGTTCAGCGAAATATTATGGAGCGGGTGTAATGGCCTAAATCGTTATAGATTAAACGTGGACATCGATTACATAAAAACTGTAAAGAAGAATGCAAAGCGACTCATTTAACGTGTTTGTCGTCGACCCCCAATAGCGTAAAAATCCCGGGGGATCGACGACAAGTCGTATTAGGCGTAAATGAGAGAAATAGGTTGTTATTGAAAGAAATATCTGATTCTTCTTGTTTTTCGATATAGAGGTTTACGGTTTGAATATGTTGATCTCTTTTGCTAAAATCGGCTTAACCATAAGTTTTATTGGGGC # Right flank : ACGTGTTATTGCAGATCCTGAAGAAAAAGTTTATGCATCCTTCTAGAATATTGGTTAAAGAGATGTTTGTAATAAACACACAAAGCCCTAGTCAATTGACTAAGGCTTAGGTAATTCCATCAATGAAGAATGGACTTCATATCCGATTGAGAGTTGGCTACTTTGAGAAAGGCTTCCACCTGTTCATAACATTCCAGGGATATGGCTATTTTATTGTCTTGTTATTGTCCCTTATTTAGAGATATATTTACAGCTTCAACAGCATGTATATAGGTTGTGTCAAATACAGGCACTTTGGAATCCTCCGGCTTAACCAATAATCCAATCTCTGTACAACCTAATATAATTCCTTCTGCTCCTAATTCAATTAACCCCTGGATCACTTTTTTATAGTAGTCCCTTGATTCTTGATCAATTTTGCCCAAACATAATTCCTCATAAATAATCTTATTGATAAGTTCTCTTTCATTGGCATTTGGAACAATAACTTTTATCCCATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAACGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //