Array 1 43921-45596 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIVW01000010.1 Escherichia coli strain AF90 contig_0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43921 29 100.0 32 ............................. TCATCAGATGGTGATGAGGAAAAATTAATAGA 43982 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 44043 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44104 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44165 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44226 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44287 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 44348 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 44409 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 44470 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 44531 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 44592 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 44653 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 44714 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44775 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44836 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44897 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44958 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45019 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45080 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45141 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45202 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45263 29 96.6 32 .A........................... CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 45324 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 45385 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45446 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45507 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45568 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61113-62240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIVW01000010.1 Escherichia coli strain AF90 contig_0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61113 29 100.0 32 ............................. CGATCCGGGCGTGCCGTTTGTTGCTCGCGGTA 61174 29 100.0 32 ............................. ATTATATATATCAAAATATTGGTCCTGTATTT 61235 29 100.0 32 ............................. CAGATCGTTAAGGCAAAAACGCCCCAACGAAT 61296 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 61357 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 61419 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 61480 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 61541 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 61602 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 61663 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 61724 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 61785 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 61846 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 61907 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 61968 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 62029 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 62090 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 62151 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 62212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //