Array 1 17237-15950 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVY01000040.1 Streptococcus gordonii strain BCC09 D8806_contig040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17236 36 100.0 30 .................................... TTGTGTTTGCTAATTTCTTTTGAGTAGATA 17170 36 100.0 30 .................................... GAGTAAGAACACCAAGCCTATCAAAGAGCT 17104 36 100.0 30 .................................... ATATTTGTAAAGCTCTAAGATCAAGTTATT 17038 36 100.0 30 .................................... ATCCTTTGGTTGCAGGGGATGTTGAAGCAT 16972 36 100.0 30 .................................... ATCTTGAATTGGCGTGAAACTCCAATTTTC 16906 36 100.0 30 .................................... TTAAACTCAGATACAGATTGGCCATCGTAA 16840 36 100.0 29 .................................... ATTTGACGCAAGCTTAGTTAGTCGGGTAG 16775 36 100.0 30 .................................... CTTGCACTTTTAGCCTTGTCACCAGCTTCT 16709 36 100.0 30 .................................... TAGCTCCGTCTGACTCACGTAAACCAAGTA 16643 36 100.0 30 .................................... TTGTCGATGGTTTTCATCGATACACAACCA 16577 36 100.0 29 .................................... ACTTGACAATTTTAATGCATAGTATTAAA 16512 36 100.0 30 .................................... AAAATGGCTAGTATTGAGGAAATGTTACAA 16446 36 100.0 30 .................................... GAGGTGTGGCGCTATAATGGCAACGCACCA 16380 36 100.0 30 .................................... TTACCTCATTTCTTGTTAAAATGAGTATAG 16314 36 100.0 29 .................................... CGACCACGTTTACATTTCATTTTCTGGAG 16249 36 100.0 30 .................................... GACGGCAACCAATTATCATTTTTTGACCCA 16183 36 100.0 30 .................................... ACTTGGCTTGACGGCTACGAGGTCGAGAAA 16117 36 100.0 30 .................................... CATTCACTCAAGTAGCAAATGCTTCTGAGA 16051 36 100.0 30 .................................... CCTGATTGCTAAAGGATTTATTATCCCGTT 15985 36 80.6 0 .........................G.G.AATT..G | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATCTATCCTACAGTGAATTTGTTAAGTGTTGCGAAAAAATGGAACTTCTTACTAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATCTCCAGGTCACTAAAGAGGTGTTAGAGGAAATCAATATTGTTTCAGATTATGTGGATCATTTTTATTCGTTAGAATTTATGTATGATCGTTTTACTAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCGGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTAGTATTAAAGATTTTAAACAACTTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGTGATGTAAGGATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGGATTTGAG # Right flank : TTATTCTTTACGAATTTATCAAAACAACCACCTATTAGGTGGTTGTTTCATTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGCTTGAGCTGTTGCTACTGGTTTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTTTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCAACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATATCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGTGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //