Array 1 24249-22893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYK01000030.1 Neisseria meningitidis strain NM2237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24248 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24182 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24116 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24050 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23984 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23918 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23852 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23786 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23720 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23654 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23588 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23522 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23456 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23390 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23324 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23258 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23192 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23126 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23060 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 22994 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22928 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //