Array 1 148854-150473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKA010000001.1 Cronobacter sakazakii strain Crono10-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148854 29 100.0 32 ............................. GTTTATGGCGGCGTTCAGTACCTTTTCACCTC 148915 29 96.6 32 ............................C GCTGATATGCGTAAGGCTCGAAGAAGTCGAGC 148976 29 100.0 33 ............................. CGATACGCGCTGGCTTACAAAGCCTATCGCGGC 149038 29 100.0 32 ............................. CTTCCGCTCCTCTTGTGAGAGGCTTTCCAGCT 149099 29 100.0 32 ............................. AGCTTGGCCGCCAGGCTTACGAATCGCTGGTG 149160 29 100.0 33 ............................. CTAAATTAGCAGATATTAGCGCACTGCTTGTTG 149222 29 100.0 32 ............................. CTTCAGGTTTCCGACCTGCCAAATGCCATGCA 149283 29 100.0 33 ............................. TTGGTGTTGGTGCATATAGCAGTCAGGACACTT 149345 29 100.0 32 ............................. CAGCCTGAATATGACCCTCGGTGAGCAGGGAT 149406 29 100.0 33 ............................. TGGGGCGATCTCTCGCTCAAATTAACCACCGGC 149468 29 100.0 32 ............................. CCTTCTGCGCTCCCTCCGGAGATTTTTTCGAT 149529 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGACAC 149590 29 100.0 32 ............................. CCCCGCTCTTTTTTCTGGCAGGTAATTATATC 149651 29 100.0 32 ............................. CTGCCGGTTTCAACGGTAACATTGTCCACGAT 149712 29 100.0 32 ............................. CCGCCGTAACGGCTGATTATGGTCGAGTTCTG 149773 29 96.6 33 .C........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 149835 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 149896 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 149957 29 96.6 32 .C........................... GCGTTTTACAACACCCCTCTCGGCGAGCTGTG 150018 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 150079 29 100.0 32 ............................. TCGGCACCGGTTGCGGCGTTTTTAGTCAGAGC 150140 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 150201 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 150262 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 150323 29 100.0 32 ............................. CCCGTGCAAACGAGCATCGACGGTGGCGTGGT G [150344] 150385 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 150446 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTCGCGCCTGTCACTCGCCACCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176170-177722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKA010000001.1 Cronobacter sakazakii strain Crono10-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176170 29 100.0 32 ............................. TGCCGTGGCATCTTTACTTGCTTCATTAACCG 176231 29 100.0 32 ............................. CCAGCTATTTTTTGCAGGTCAGGGGATAGATA 176292 29 96.6 32 ............................A CCCCGTCCGGTATATTCCTGGGCTGGCCGGAG 176353 29 100.0 32 ............................. GTGCGCAGAAATCGCACGTCGAGGCGACACCT 176414 29 100.0 32 ............................. GGGCTGCATACCGGCGGGCCCGAGCGCTTCCC 176475 29 100.0 32 ............................. GTTCAACGATAAAACGCGGATCACCAGTGTTA 176536 29 96.6 32 ............................T TCCACATTCATTATATTGACGGAAACGACAAT 176597 29 100.0 32 ............................. GAGTGACTGTGCGCCCCTCCAGAATCCACAGT 176658 29 100.0 32 ............................. GCGGTGCCGCATGAAAATCCACTTCTACAGCC 176719 29 100.0 32 ............................. CATCCATTGCTCGCGTCGCCCAACCATTAGGG 176780 29 100.0 32 ............................. TGATAACGCCTGTTTTTGCGACCAGGTCAGCT 176841 29 100.0 32 ............................. ATTGATGCCCGCTAACCCGGTGCGGGCGTACA 176902 29 100.0 32 ............................. CCAGTATCACCTTTCAATTTTACCCCTTCCAT 176963 29 100.0 32 ............................. CCCCTGACCTGCCAGTGCTTCCACTGTCGCCA 177024 29 96.6 32 ............................C ATCAATATCGACTATTTCCCTTTCAATCGCCA 177085 29 100.0 32 ............................. TGCCGCATTTGCGGTGCTGAAATGACAATTCA 177146 29 100.0 32 ............................. CATGGCTTGACCCTGATTTGAATACAAAAGAA 177207 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 177268 29 100.0 32 ............................. GATATATCAACTAGTTGAAATATATCGTTTTT 177329 29 93.1 32 ...........G................T ATCCCCCAGCATAACTCATCATCTCGCTGGCC 177390 29 96.6 32 ...........G................. GTGGTAACAGTGGTAACAGTGGTAACAACCAT 177451 29 93.1 32 ...........GG................ GATTCTGTCGGCGGGTGGCAGAACTCGCTGGA 177512 29 96.6 32 ...........G................. TATTCATCTTAACTCCTAAATTTTGTGAAAAA 177573 29 96.6 32 ...........G................. CGACACGATCCGCCGCCTGGGTTACGAAAGCG 177634 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 177694 29 89.7 0 ...........G.........G......A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.2 32 GTGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : AGTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATGGTATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAATGCGATCCCCGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //