Array 1 1189024-1190310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026328.2 Acidithiobacillus caldus strain MTH-04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1189024 28 100.0 33 ............................ CAGAAAATACGTGTCCGCGCAGCGTTTCTGGCG 1189085 28 100.0 33 ............................ TCTGTCCACTTCGTGGTTTACCACTTCGTGGGC 1189146 28 100.0 33 ............................ CTGCCTCGGGTCGCCAACACTAAGTGTTCTGGC 1189207 28 96.4 27 ............C............... CTATTCGACGTAAGCCAGCGCATTCTC 1189262 28 92.9 33 ..............C........G.... GGATGGTGAGGTACGCGCAGACGCTGAGCTTTC CA [1189265] 1189325 28 82.1 33 CCA...........C........G.... AGACCAAATTTGACGGTCGGCAGTGGGACACGG 1189386 28 92.9 27 .............AC............. TGGGGACAAAAGGAATGTCCACGCGCA 1189441 28 96.4 33 ............C............... CGGCGAGGAGCACCTTCTCGAGGCCCATAACCC 1189502 28 89.3 33 .....T......C.........G..... TATGGTGACGCCACCAAGGACGACACCTCCTTC 1189563 28 85.7 33 ...T........CA.A............ TTGAGATCCCCGAGGGAGCGACAGACTGGAACG 1189624 28 100.0 33 ............................ TGATACCCAGATCGACCGGGTTCTGCGCCACCT 1189685 28 92.9 33 .......T...A................ GATCATGACCAGCGGCGGTGTCCTCAAGGGCAT A [1189696] 1189747 28 92.9 28 .............AG............. TATCTGGTTGCCAAGGCTAAAGATACCG 1189803 28 96.4 33 ............C............... CATCAAAGAGGGTTCCTCGCGAGATTTTCCTTG 1189864 28 96.4 33 ..............C............. CGGCGAGGAGCACATTCTCGAGGCCCATAACCC 1189925 28 96.4 26 ............C............... GTGATAGATAGCCATGCCTGCTCCTG Deletion [1189979] 1189979 28 96.4 33 ..............C............. GCTGGCGCAAGGACTGGCAGGCAAGCGGGGCTA 1190040 28 92.9 33 ............C..A............ TTGAGATCCCCGAGGGAGCGACAGACTGGAACG 1190101 28 89.3 33 A....T.....A................ TCCACCGGCGGCCAGGTCTCGTAAGGATCCGTC 1190162 28 96.4 33 ..............C............. TTCCGAGAAACCGGCAACCACCTGGCTGTCGGG 1190223 28 92.9 32 ..............C........G.... CCAGGTCTCGATTTCCTTGTCGTTTTTCGCTG 1190283 28 75.0 0 T............AG........TTCG. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 93.3 32 GTCGTCCCCGCGTGTGCGGGGGAAAACC # Left flank : ATTCGGTGGACGACCGGGATTTCCTGTTCGCGCCGTACGGGGAATCCATCGTGTTTCGTTCCCGTTCGGAACCCTTGCCGGACACACACGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGCAGGTCGAGCCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCGGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : CACCAAAATCGGTGTTTTTGTTCGTTTGATAAAAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGATCGGCCTTTTCGTCGGACGACAAGGGGGCGCCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGTTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCCTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAACGGAAAAAGGACAAGGGAAACCCCCAAGGCCGGAGTAACGGCAAAACGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGCCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGCTGCCCAACGCGCAGGGGCA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1191370-1192431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026328.2 Acidithiobacillus caldus strain MTH-04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1191370 28 100.0 33 ............................ GCCGACAGGCTGGCCGCGCTAACGGCTGGTTGC 1191431 28 100.0 33 ............................ CCACAAGTCGGCCACCGGCAACACGAATCTGGG 1191492 28 100.0 33 ............................ GTCATACCAAGCCTCTGTAGCATGGTGGATGCC 1191553 28 100.0 33 ............................ GTCCCAAGTCCGCGGCGCTGGAATATCTGCCGC 1191614 28 100.0 33 ............................ GCGATATCAGGGTGTTTCTGGGGTCTCTGTTCT 1191675 28 100.0 33 ............................ CGAAGATGAGGCGATAAGTCCAGACGACGCACT 1191736 28 100.0 33 ............................ GCGACTGTGGGAAATTCTTACCGAGCACCAGCC 1191797 28 100.0 33 ............................ GTCATGAAAGCGTCTACGACCTTGAATAATACC 1191858 28 100.0 35 ............................ TCTTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 1191921 27 92.9 33 ..........T...........-..... TGGGGTCCAGCCCGCGGCCTTGCAGCTTGAGCC 1191981 28 89.3 27 .............AT........G.... CGTTCCGACGTAAGCCGGTCAATCATC A [1191984] 1192037 28 100.0 35 ............................ CGCCTTGAGCTCCCTGGATTCCGCCATGTGGAGGA 1192100 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 1192161 28 89.3 31 .........................CTT TTTGCAATCCGCATTTCGCATTTGCTGCGCT 1192220 28 85.7 33 T..........A..T........G.... TTGCGGGGTTGTCTCTGTTGGAGATTTTGGGAA A [1192230] 1192282 28 89.3 33 ...A..........T............T ATGCAGTGGCTCGGTGGTTCGCGGGCCAATAGG 1192343 28 92.9 32 .............A.........G.... CGATTTGGTAGCAGACCATCTGGTGGATAATC 1192403 28 89.3 0 .G.........A..T............. | T [1192406] ========== ====== ====== ====== ============================ =================================== ================== 18 28 95.8 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACAGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAAGGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAGCATCTGTCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGCTAGA # Right flank : CGGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTGGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCATGCACCTGCAGGTGTTCCTGGTCGTGCTCGACCAGAAGTATCCCGTACACCTGCAGGGGCTGTCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGAGCGTGTTGCGGACGTTTGCCCGAGCACGCGCACACCGTTTTCTTCGAGTATCTGTACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //