Array 1 1115-1935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWW010000008.1 Escherichia coli strain 916-43 916-43_S11_L001_NODE_8_94530_cov_22.098260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1115 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1176 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1237 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1298 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1359 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 1420 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1481 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1542 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1603 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1663 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1724 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1785 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1846 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1907 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163-1411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCWW010000085.1 Escherichia coli strain 916-43 916-43_S11_L001_NODE_85_18316_cov_21.927649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 224 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 285 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 346 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 407 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 468 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 529 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 590 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 651 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 712 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 773 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 834 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 895 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 956 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 1017 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 1078 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1139 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1200 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1261 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1322 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1383 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //