Array 1 504489-505493 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTV01000002.1 Salmonella enterica subsp. enterica serovar Takoradi strain HIY0264 NODE_2_length_740623_cov_52.972741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504489 29 100.0 32 ............................. GCGTTATTCATTGCATCAATAGCATATTCCCG 504550 29 100.0 32 ............................. TGAGTGCAACATTCATTGTTTCCTCGGTCAGG 504611 29 100.0 32 ............................. ATCAGTCAGGGGAAACAAATTGGGGAGTCATA 504672 29 100.0 32 ............................. CGTTAGCGGTTGAGCGTGACACCCTGGCGGCG 504733 29 100.0 32 ............................. TAAATGATATTGATGTAATGACGCGACTTTGC 504794 29 100.0 33 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTATG 504856 29 100.0 32 ............................. AGTTTGCTATTAACAACAATGATTGTACTTGC 504917 29 100.0 32 ............................. CCTTTGGGGGCGCCGCGAATTTTCAGCAGAAT 504978 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 505039 29 100.0 32 ............................. GAAATGACTCAATCTCAGCAAACCATGCCGGC 505100 29 100.0 32 ............................. CCATTTTGTTTTCCCAGCCCTCTTCATCCGGT 505161 29 100.0 32 ............................. AACAAACTAATGTTTGTTTTTACCAGGTCGTT 505222 29 100.0 32 ............................. GTCGGGTTGCGATATATCCCGCTTTCTGGCCG 505283 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 505344 29 96.6 32 ...........................T. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 505405 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 505466 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 521665-522915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTV01000002.1 Salmonella enterica subsp. enterica serovar Takoradi strain HIY0264 NODE_2_length_740623_cov_52.972741, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 521665 29 100.0 32 ............................. GTCGTTTTATGTTTTGAGCCATCGTTACACTT 521726 29 100.0 32 ............................. ATCCCCGGCGATAACGGGCGCGTAGTCAGCAA 521787 29 100.0 32 ............................. ACCAGGCGGTAGCGCTGAAGAACGCCGCTGAT 521848 29 100.0 32 ............................. ACCCGTATCCGAGGCCAACGCGGCTACGAAAA 521909 29 100.0 32 ............................. GTAATCGCAACCAGAGCGAAAGCTCCATCGCA 521970 29 100.0 32 ............................. CAGACGAGGAACGCCTCACTGCATCCGTTGGA 522031 29 100.0 32 ............................. TCACAGCAAGCCAACTCCTAAGAAATCCTAAG 522092 29 100.0 32 ............................. GTGGTCTAGGATTTGTCGATACTGCTGATCCC 522153 29 100.0 32 ............................. CGTGAACATACGGCAAAGGCTGGATTCACAAG 522214 29 100.0 32 ............................. CCGCTCAACTCTTGCCGCATATCGTTGAGCTG 522275 29 100.0 32 ............................. GGTAACTCGCAATATAGGTGGCGCCTCGCCCA 522336 29 100.0 32 ............................. GATGATCTGGTGGCCCTCCCTCAGCGATGGCA 522397 29 100.0 32 ............................. GGGGGCGGCGGGCGCCGTGGGGGCAGCTATCG 522458 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 522520 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 522581 29 100.0 32 ............................. GGCCAGTAATAAAAGAGGTGGTAGTAACGATG 522642 29 100.0 32 ............................. CCGAGTTCGCGCAGTGTTTCTGTGCAGGTATT 522703 29 100.0 32 ............................. ACCGCAATAAAAATTTACACCGCCACACCGGC 522764 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 522825 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 522886 29 96.6 0 A............................ | A [522912] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGATTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTATCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAATCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //