Array 1 42940-43579 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXY01000023.1 Escherichia coli strain 6_Esco_CA-NL L0426c_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42940 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 43002 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 43063 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 43124 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 43185 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 43246 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 43307 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 43368 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 43429 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43490 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43551 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69283-70593 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXY01000023.1 Escherichia coli strain 6_Esco_CA-NL L0426c_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69283 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 69344 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 69405 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 69466 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 69527 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 69588 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 69649 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 69710 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 69771 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 69832 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 69893 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 69955 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 70016 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 70077 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70138 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70199 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70260 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70321 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70382 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70443 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70504 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 70565 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //