Array 1 12493-12028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQH01000070.1 Bifidobacterium longum strain 1890B Contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 12492 36 100.0 34 .................................... CGACATGCTGGGCGCTCTTGTCACCGTCGTGACC 12422 36 100.0 36 .................................... GGTCGGGCCATCGAATCGACTTGGGACGCACACCCC 12350 36 100.0 37 .................................... AAGTCGAGCGCCCAGACTTGGGTATATCGCGGGGGTA 12277 36 100.0 35 .................................... ATACAATTGGCTTATGCATGTTTCAACAATGATCA 12206 36 100.0 36 .................................... CCGCAAGGTTCGCCACGCGATCGCAAAAGCTCTTAA 12134 36 100.0 35 .................................... CTCGCCCAGACCGGCAAGGACGCCGGCGACCACTT 12063 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 99.6 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : TGAAAAGCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGCGGATGTTTTTTTGGACGGTCAGGCGGACAGTCCAAGGTGTTTGCGGTGTTGCATGGGGCTTATCCAGTCCAGTGACTTCTTGATTCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGTGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCATACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCCATGTTAGAGGACGTAGCTGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACCATAAATTCGAGCCTGC # Right flank : AGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCGAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAAACAGATAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTACCTGCAATCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCGGTACGTCCGAAATGGCCGTAAGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 843-1187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQH01000023.1 Bifidobacterium longum strain 1890B Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 843 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 909 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [915] 993 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 1053 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [1101] 1101 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 1158 27 85.2 0 ..............C.....C....CG | GC,C [1176,1180] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : GTTTTGTTTGGCGACTGAAATCGTACCCAGACGACGGGCCATGCCTCTTCATTCAGGCTTCAACCAAAGTGCGCAACAAACCGGGCGTTATCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //