Array 1 825780-826828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015562.1 Pasteurella multocida strain USDA-ARS-USMARC-59910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 825780 28 100.0 32 ............................ ACAACAAAAAACTTGTGAACGTTTAGCCGCAA 825840 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 825900 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 825960 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 826021 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 826081 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 826141 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 826201 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 826261 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 826321 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 826381 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 826441 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 826501 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 826561 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 826621 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 826681 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 826741 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 826801 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2102610-2101683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015562.1 Pasteurella multocida strain USDA-ARS-USMARC-59910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2102609 28 100.0 32 ............................ GCGGGCACCGGGATTTGCCGATAACCGTACCT 2102549 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2102489 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 2102429 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 2102369 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 2102309 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 2102249 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 2102189 28 100.0 32 ............................ ACTTAGAACTCCACCGGCTCTCGATTCTTCAG 2102129 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 2102069 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2102009 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2101949 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2101889 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2101829 28 96.4 32 .................T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2101769 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2101709 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //