Array 1 117226-115328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEI010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-12 NODE_6_length_167585_cov_4.491293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117225 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 117164 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 117103 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 117042 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 116980 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 116919 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 116858 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 116797 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 116736 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 116675 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 116614 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 116553 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 116492 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 116431 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 116370 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 116309 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 116248 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 116187 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 116126 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 116065 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 116007 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 115946 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 115885 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 115824 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 115763 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 115702 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 115641 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 115580 29 100.0 11 ............................. CGGCCAGCCAT Deletion [115541] 115540 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 115479 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 115418 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 115357 29 93.1 0 A...........T................ | A [115330] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135124-133508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEI010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-12 NODE_6_length_167585_cov_4.491293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 135123 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 135061 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 135000 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 134939 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 134878 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 134817 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 134756 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 134695 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 134634 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 134573 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 134512 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 134451 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 134390 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 134329 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 134268 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 134207 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 134146 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 134085 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 134023 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 133962 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 133901 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 133840 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 133779 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 133718 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 133657 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 133596 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 133535 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //