Array 1 20501-21064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAFW01000017.1 Mycoplasma gallisepticum strain K6112B contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20501 36 100.0 30 .................................... CCTCAAATTAAAAAAGATATTTTAAAAAGT 20567 36 100.0 30 .................................... AAAGCGTTTGGCGAATCAATCGAATACTTA 20633 36 100.0 30 .................................... TCAAACGAAAAAATACTTTTGGCGACAACA 20699 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 20765 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 20831 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 20897 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 20963 36 100.0 30 .................................... GATTAATATATCAAAAACAAAGTTAGGTTA 21029 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : ATGTTGAAAAACTTGAAAAACAAGAGATAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 35-2908 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAFW01000042.1 Mycoplasma gallisepticum strain K6112B contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 35 36 100.0 30 .................................... CCAATTTACAAAACTCTGCGAGTGCTCAAT 101 36 100.0 30 .................................... CAATCTCAACTTTAGATCAAAAACTGTTAA 167 36 100.0 30 .................................... GATTAATATTTCAAAAACCAAACTAGGTCA 233 36 100.0 30 .................................... AAATGGAAAACGAACAACAAGATAAACAAG 299 36 100.0 30 .................................... TAGAGTTTTTCAAAAATGCTTACATGAATA 365 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 431 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 497 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 563 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 629 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 695 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 761 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 827 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 894 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 960 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 1026 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 1092 36 100.0 30 .................................... AAAACTTAACTAATTTAACACAAAAAGTTG 1158 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 1224 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 1290 36 100.0 30 .................................... TCCACCACCCCACTGTCCTACACTATTACC 1356 36 100.0 30 .................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 1422 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 1488 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 1554 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 1620 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 1685 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 1751 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 1817 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 1883 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 1949 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 2015 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 2081 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 2147 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 2213 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 2279 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 2345 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 2411 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 2477 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 2543 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 2609 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 2675 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 2741 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 2807 36 100.0 30 .................................... TCCCATTCTATTTTAACGTTTGAAAATGAA 2873 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TAACAAGCGGCATATCAAATTACGAACGGTGTAGG # Right flank : TTTGAAGGTGTTAAATATCTTATTTTTGAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 33-1256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAFW01000058.1 Mycoplasma gallisepticum strain K6112B contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 99 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 165 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 231 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 297 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 363 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 429 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 495 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 561 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 627 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 693 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 759 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 825 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 891 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 957 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 1023 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 1089 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 1155 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 1221 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : GATCCAAGAAAAGATGAAATCTTAAGATACTTG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 34-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAFW01000059.1 Mycoplasma gallisepticum strain K6112B contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 100 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 35 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : AACCTATGATCTTTAAAGCACAAAGTTAAAGACG # Right flank : TCGGATTATTTCTATTACTTATTCTTAAATGTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 33-266 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAFW01000060.1 Mycoplasma gallisepticum strain K6112B contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 .................................... TATACAACTTAGTTTATGACGTTTATATAA 99 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 165 36 100.0 30 .................................... TCTTCACGTAAATCAAAGTTACCAGAATAC 231 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : ACATTTTAAAGATAAATCTGCGCTTGAAGTTGG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //