Array 1 187-420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZS010000029.1 Listeria booriae strain FSL L7-0054 NODE_29_length_39207_cov_22.208700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187 36 100.0 30 .................................... AACAAAGAAAAGAATTCAACGTTACCGCAA 253 36 100.0 30 .................................... GAAGATGCGATGAGTACCATGTCTGATCAA 319 36 100.0 30 .................................... GTTCAATCTACGTGATAAACGATAACGGCC 385 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : TAGATCCGTTTTTTATACGGGCTCGAAGCCCAAGAGGCTGGTCGATCTATACTTCACAACTACTATAACAAAAAAATAGTAGGCAAGACCATGGCCGTGGTCTTACCTACTAATCTTAGTATGTTTTCTATGGTTACTAACCTCCGATTAATTAAAAATAACTTATCCCACTTATCCACATTAGAGG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGGTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGTATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 3873-4371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZS010000029.1 Listeria booriae strain FSL L7-0054 NODE_29_length_39207_cov_22.208700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3873 36 100.0 30 .................................... AAAAAGAAAGTGGCATGTCCCCTTCATCTT 3939 36 100.0 30 .................................... TAAACCTTTTAAACAATCGTAAAGATGACG 4005 36 100.0 30 .................................... GTGTCGAACATGATAAAGATGTTGCGGAGC 4071 36 100.0 30 .................................... ACTGATGGTGGTGTTGAACTGAACATCGAA 4137 36 100.0 30 .................................... CGTCTACTAGCATTTGTGTTTCTTTAACAA 4203 36 100.0 30 .................................... AATCACATGTTAAAACTCGTTACGTTTCGG 4269 36 100.0 30 .................................... GCTTGAAAATGGTGAACAAACGCATTCCAG 4335 36 83.3 0 ..........C...............TG.A..C..A | A [4364] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTGCTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 18927-19420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZS010000033.1 Listeria booriae strain FSL L7-0054 NODE_33_length_36917_cov_20.726583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 18927 30 100.0 36 .............................. TAGTGATATAATAGCATCTACTGCATGATAGAAAGC 18993 30 100.0 35 .............................. TTGCACCTAATTCTTTGATAGCATCCTGTTTGGAT 19058 30 100.0 36 .............................. ACCAGTTCGATCTGATGTTTTAGCTCCAATGGATTG 19124 30 100.0 36 .............................. TATGATGCTATGAAAGTTAAACACAAATGTCTCCTT 19190 30 100.0 36 .............................. CTGTGTGGCGCTTACAGGCTATGACAGTGGCAACTA 19256 30 100.0 36 .............................. GATGGACGAATGACGAATTCCACATATGAGGGAATA 19322 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC AATA [19336] 19391 30 83.3 0 ........TC...C...A......A..... | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAATGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTAGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGGAAAAGGGCGCACTTATACACCCTGCTTTCCCAAAGTACTATGAAACATAAATCGATCTAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACAAGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16692-15340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZS010000017.1 Listeria booriae strain FSL L7-0054 NODE_17_length_80324_cov_22.482724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16691 36 100.0 30 .................................... TTAACAGAAGGTCTACGTCGTCCTTGTTCT 16625 36 100.0 30 .................................... ACACTTATCCGTTTCCACAGCTAGATGTAG 16559 36 100.0 30 .................................... GCTACAGAGAAAGACAGCAAGAAGTCATCA 16493 36 100.0 30 .................................... ATTGAGGGGTATATTGAAGCATTACGGCAA 16427 36 100.0 29 .................................... ATTCCATCGTGGTGTTTGCAGATGGTTTT 16362 36 100.0 30 .................................... CCAACTGGCAAAGATTGTGGGGTTACGACC 16296 36 100.0 30 .................................... TAGCAGCTCTTGAAATAACACCATTTACCT 16230 36 100.0 30 .................................... TTTTAATGCAATATGTGATATATGATGATG 16164 36 100.0 29 .................................... ATGCTTGTAATTTTTCACGCTGTGCAGAT 16099 36 100.0 29 .................................... ATGCTTGTAATTTTTCACGCTGTGCAGAT 16034 36 100.0 30 .................................... AAAAATAAAGAATGATACATCTATAGATAA 15968 36 100.0 30 .................................... TTTATCACTTGTGGAAAGGTGCCGAAGTAA 15902 36 100.0 30 .................................... AGACCGTGCAAGCGATAGCTGCAATATTTT 15836 36 100.0 30 .................................... GATGCGTTTTTAAGTCTAGGAACAGGGAGT 15770 36 100.0 30 .................................... CGGTGCTGTCAACGGCTTCACTGTTGCGCT 15704 36 100.0 29 .................................... CAATAGCGGATTTAATTGCGAAGTAGGCA 15639 36 100.0 30 .................................... CGCAGTTACGAACGTTAGCAAAAGCGTGGT 15573 36 100.0 29 .................................... TCGCTCCGGCAAGGTATTTCTACTCGACA 15508 36 100.0 30 .................................... TTGGTGCATTCTGATTCGCCAAACCTGACG 15442 36 100.0 30 .................................... TGAAAAACGAGGTGATCGGTAATGCAGACG 15376 36 80.6 0 .......................AAA.G.....CCA | C [15344] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.1 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACTCTTGTGTTTGTGGAGGGGTTTAGGTCTGGGCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAGAGGTATGCATATTATTGTACTTGATGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCTACAAGCGATAGATTGGTCTATAGGGGCTGTGGATAAGTCGAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTGTTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGATTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGC # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAATTAAACGATACAGAAATGACGATTTATCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTAGGGATTTAGCCGATGCCACCCATGTTAGCACCACGACGATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGATATGTCGGATGAGACAACATATATTGACTTTCTAAAACGCACAGCTCAGCCTGAATTCAAAGCGAATATTGCCCAGTCTGCAAAAATTTTGCGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATTGCTGAGTATGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 44975-45202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZS010000012.1 Listeria booriae strain FSL L7-0054 NODE_12_length_90058_cov_21.714770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 44975 31 100.0 36 ............................... CCTGTGATTTAATTCAGAGATACAATCGGGATAACG 45042 31 100.0 33 ............................... TGGAAGAACTAGAAAAAGGATATATGGAACGCA 45106 31 100.0 35 ............................... AAAAAAGTGGTGATACAGTTAGCATATGGGTTGAC 45172 31 96.8 0 .....................G......... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 99.2 35 GTTTTTATCTAAGTAATGTGAAATGTAAATG # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTTGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATCTTTGTTATGCATTGGTACTAAAAGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATACTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAGTACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTGACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGCCCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //