Array 1 245010-245354 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDW01000013.1 Bifidobacterium longum strain APC1478 contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 245010 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 245076 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [245082] 245160 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 245220 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [245268] 245268 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 245325 27 85.2 0 ..............C.....C....CG | GC,C [245343,245347] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42139-39145 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDW01000010.1 Bifidobacterium longum strain APC1478 contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 42138 35 100.0 37 ................................... ACTTGAAATGGGCGGCCTACGCGCTATGGGTGAGACG 42066 35 100.0 36 ................................... ATCCGGTCATTAACGAGATGACCCAGCAGACCAATC 41995 35 100.0 37 ................................... ACGTTAATGGTGGACATCAATGCTTGCGCTGTCGGCT 41923 35 100.0 35 ................................... AGCCTCGTACACGGTCGGCCCTTTCGGCACCGGGT 41853 35 100.0 38 ................................... ATTGGGCCGGGACTACGGCCCCTCGGATATTGTCCACT 41780 35 100.0 38 ................................... ACCGTATGGGGGTATGAGGGCGAACGTCTGGACAGTAC 41707 35 100.0 37 ................................... ACTGATTGCAGATTCATACGTCGTTGATTCGACATGC 41635 35 100.0 36 ................................... AGTGGTCGGCCAGAAACGGTTCGTGGCCACGATGCG 41564 35 100.0 37 ................................... ACCGCAAGGTTCGCCACGCGATCGCAAAAGCTCTTAA 41492 35 100.0 35 ................................... ACCGTCGAAAAGACAGTAGTTCAGGGCGGTGTACG 41422 35 100.0 36 ................................... AGCAACGAGGCCACACCCACCGCACAGGCCGGCGAC 41351 35 100.0 38 ................................... ATTCGACTTTCGGTAAAGCAATGGCGCAGGTCATGAAA 41278 35 100.0 37 ................................... AGTCATGACATGCCCCGGATACTACAAGCTCGAAAGC 41206 35 100.0 36 ................................... ACTGAATGTCGTCAACAATGGGTACACGGTCACCGG 41135 35 100.0 36 ................................... ATTCGGCGGTTTGAAGAACGCCGCGAGCGGGCTTAT 41064 35 100.0 37 ................................... ATACGTGGGCGACGTTGTAACCTGCCGCTAACCCAAA 40992 35 100.0 37 ................................... ATCCGGCACGGGCGTGGTCAACACGTGGAGTCCAATC 40920 35 100.0 41 ................................... AGACCTGCTCAAGCGCGGCCTCATCCACCAGATGAGCATCG 40844 35 100.0 36 ................................... GGCGATGCAATCGCAGTTCGGATGCCTCTCGAAGGG 40772 35 100.0 36 ................................... AGTGGTGGCCATGCCTTGGATGAACCGCAGGGCCTG 40701 35 100.0 38 ................................... ACAGTGGACGACCACGCGGGCCGCCAAATCGCCCTTAC 40628 35 100.0 37 ................................... AGCTCAGCTGGAGACACTGCCGGTACCCGACACGGTC 40556 35 100.0 36 ................................... ACACGTCAAGGACATCATCCAGGACACCAAGTGGTT 40485 35 100.0 38 ................................... AGTGGCGTCCGCTAACGGTAAGTGTGTTGTCGCCTATC 40412 35 100.0 39 ................................... ACAGCACGGCGAGCTCATCGGCCGCATCACCAGCGCCGA 40338 35 100.0 37 ................................... GGTTTGTGGATTGCCCAGTACGCCAACATGTCGCCGA 40265 35 100.0 37 ................................... GGGCGAGGCCATGCGCCAGTACAGCGGTACCGGCGTG 40193 35 100.0 39 ................................... GCGCTAAGGATATTGCAGACATGGTGGATCGCGTTGACG 40119 35 100.0 37 ................................... GGCATTGAGCGCCGCGAACGTGTCGTGGCTGCCGGCT 40047 35 100.0 37 ................................... GTACCGAGTTACAGAGATTAGGGCCACGGCCTGCAAG 39975 35 100.0 38 ................................... GCGGGCGCGATAGGCGACAACACATTTGCCGTTAGCGG 39902 35 100.0 36 ................................... GGAGGACGGCACGGCGTTGTTCCTGCGCTGCTCGGC 39831 35 100.0 40 ................................... GACGGGCCCAGTGTTGGCGAGCATGGGTTTGGCGGATGGT 39756 35 100.0 37 ................................... GACGCAAGCGGCAGTGTCGTTAACGCCGTAAGGCGTG 39684 35 100.0 37 ................................... GACGCGTTACGTCGAGGTGCCGGACTCCAAGACCGAG 39612 35 100.0 37 ................................... GATGTCCACCATCACAGTGAAGTTCGTCATCTGGGCG 39540 35 100.0 37 ................................... GGACAAGGTGCTGCTGGTGAAAAACGGCCGCCTCATC 39468 35 100.0 38 ................................... GGAGCCGCATCTCTATATCCGTATCAAACCGCTCCCGG 39395 35 97.1 38 .....................A............. GGTGGTAGTTGCGTACCGGTGGCGCAGACTATGCGGTG 39322 35 100.0 37 ................................... ATTGGCACCGTGAGGCCATTACGGCAAGAGAGGCGCG 39250 35 100.0 36 ................................... ACTCGCCCAGACCGGCAAGGACGCCGGCGACCACTT 39179 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 42 35 99.9 37 CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Left flank : TGAAAAGCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGCGGATGTTTTTTTGGACGGTCAGGCGGACAGTCCAAGGTGTTTGCGGTGTTGCATGGGGCTTATCCAGTCCAGTGACTTCTTGATTCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGTGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCATACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCCATGTTAGAGGACGTAGCTGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACCATAAATTCGAGCCTGC # Right flank : GAGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCGAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAAACAGATAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTACCTGCAATCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTAAGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //