Array 1 9421-11103 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAB01000002.1 Streptococcus equi subsp. zooepidemicus strain ISU54485 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 9421 26 100.0 39 .......................... TGTCAAAACATGTTCCTTAATATAAGTGTTACCGTCTCG 9486 26 100.0 40 .......................... TTGGTTAGACTTTGTATTTGTTTTAATATACCTAGTCTCG 9552 26 100.0 39 .......................... ATCTATCCATATCTGATTTAAAAAAAATGTACTGTCTCG 9617 26 100.0 39 .......................... TTTTTGGACAGTAGAAAAAGTAACTGCACATGGGTCTCG 9682 26 100.0 40 .......................... CAAAGGTAAAAGCTAAGATACCCGTTAAACTAACGTCTCG 9748 26 100.0 41 .......................... CTGCAAATAAATCTAAGAACCTCATTGAAACTCCTGTCTCG 9815 26 100.0 39 .......................... AAGAAGGAGTATTAACTAAGGATGATTTGAAAGGTCTCG 9880 26 100.0 40 .......................... CTATGATGCACAAAAAGGAGGTTAAGATGTTTACGTCTCG 9946 26 100.0 39 .......................... ACCTATCTAAAGCCGCCGGGAATGAACAATAAAGTCTCG 10011 26 100.0 41 .......................... CTGAGATTGATATCCAAAAAACAAAATCCAATGCCGTCTCG 10078 26 100.0 39 .......................... AGCAGCAGCCATGGCGTCTGCAGCAGCTTGTTGGTCTCG 10143 26 100.0 41 .......................... TCGACGCTGTGGAAGGAGGTGATTAGCCTTGGAGAGTCTCG 10210 26 100.0 42 .......................... ATTTCGTCCCTCCTGTTTTATGATGTAAAAAAGCCTGTCTCG 10278 26 100.0 41 .......................... TGGTACAGGTTGGGCCTTATTTAAAGGCTCAGACCGTCTCG 10345 26 100.0 42 .......................... AAGAGAAGATGTCCGACTCACCGAGTCAGAAATCCGGTCTCG 10413 26 100.0 40 .......................... TTGTTGTGTCAAAAAAGCGATAACGATCACCCCCGTCTCG 10479 26 100.0 42 .......................... GTTAAGGGTATTGTTTTACAGGATAACAAACGTAAAGTCTCG 10547 26 100.0 40 .......................... AGCTCGCTTAGGGTTAATGCCAGACTCTACTCCAGTCTCG 10613 26 100.0 41 .......................... AACTTGGGGGTTGATCAGAGTGGAGGGGTTATCTAGTCTCG 10680 26 100.0 43 .......................... CCCAGTCGTTGTGTTGCTTGCTAATGCTACGTCTCTGGTCTCG 10749 26 100.0 39 .......................... GAAGTTGAAATTGTCGAAAGGTACTTGAATCTCGTCTCG 10814 26 76.9 41 ..TTTC.T.......C.......... GATTGCTTTTGGAGTAAAACCGATCGGCTTAGCTTGTCTCG 10881 26 80.8 41 ..TTTC.T.................. GTTTGAATCAGAAACACGTGATACAAAGCTTGGACGTCTCG 10948 26 76.9 40 ..TTTC.T.......C.......... CTGAAATTGCCCCTGCTGAAAACATGAAATTAAGGTCTCG 11014 26 80.8 37 ..TTTC.T.................. GCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCG T [11038] 11078 26 61.5 0 ...TT.GT...T.C....T.C.T.T. | ========== ====== ====== ====== ========================== =========================================== ================== 26 26 95.3 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : TATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACACTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TCTTTGTTTTTCATGAAGGGGTAAATCATATTGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGGCATTTTGTTAGATTCTGATGATTCTAGGTCTATTACTATTTTTGGCAAGAAACTATATTGGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //