Array 1 1750114-1749671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021394.1 Bifidobacterium breve strain NRBB56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1750113 33 100.0 35 ................................. TTGGACAACGGGTACCGGTTGCCGTCCATACGGCG 1750045 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 1749978 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1749909 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1749840 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 1749772 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1749703 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 97.4 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CCACACTGGCCTATAACAACTTGACAAAACACAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCTCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCAGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCGGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACATCCGAAACCCGA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1758509-1755169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021394.1 Bifidobacterium breve strain NRBB56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1758508 33 100.0 35 ................................. TCTCTACAAAATACGACGGCGGCGCACATGTGCCA 1758440 33 100.0 36 ................................. GTGGATGACCAAGCACGTTTGCATGTCCAGCGTGAG 1758371 33 100.0 35 ................................. ACGTTCGCGCCCGCCCTGACCATGAGACTCGCGGC 1758303 33 100.0 35 ................................. TGAAGGGATTTTCCCGAAGAAGCGGCAGAGCGAAA 1758235 33 100.0 34 ................................. GCATATTATCCACATATAATGTCGCAAATCACAG 1758168 33 97.0 34 ...................A............. GTCAAATCGGTGGCCGCCGTGGATGTCCGTAGCA 1758101 33 100.0 34 ................................. GTCAAATCGGTGGCCGCCGTGGATGTCCGTAGCA 1758034 33 100.0 34 ................................. GACTATGTGCGAGACGATGAATACGCCGAGCAAA 1757967 33 100.0 34 ................................. CTCGTCCGACGCGATCATGGCGGCGGAAAGCGAG 1757900 33 100.0 34 ................................. ACGGCGGTGTTCGCCATGCCCCAGGTGTGGTGGC 1757833 33 100.0 35 ................................. ATGCAGACCACATTGGCCAGCGCGGCCCGTGTGCG 1757765 33 100.0 34 ................................. CAACAGTCCGAGGTCACGGGCTCGGATAAGCTGG 1757698 33 100.0 35 ................................. AGGATCGACCAGTGGGGAGATAACGCTTCGACTCA 1757630 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 1757567 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1757499 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1757431 33 100.0 34 ................................. ATATCCTACAGCGTCCACCCCTCTCATCGCATTC 1757364 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 1757296 33 100.0 35 ................................. CTGACTGCCGATCTCGAACAGGTCTGTGACGGTCG 1757228 33 100.0 35 ................................. TACGATCCGCATGACACGGCGCATCTCCTGGTCAC 1757160 33 100.0 34 ................................. CGAGAGCGCACGTAAATCGCTCGGTTCGCCGTAA 1757093 33 100.0 35 ................................. CGCCTGATTACGTGACATTGCAATCCAATATGCTG 1757025 33 100.0 35 ................................. CTTTGTATGCAATCGTATCAACGCCCGTCGCGACC 1756957 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 1756889 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 1756822 33 100.0 35 ................................. TTCGCGGCGCTGCCTGCGGGGATGTGCTCGAACGC 1756754 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 1756686 33 100.0 35 ................................. TATGACACGGTTATATTGAGCACACCGCGACAGTG 1756618 33 100.0 33 ................................. ATCACCAGACGATAAAGACCAGGCTCACTAATG 1756552 33 100.0 36 ................................. ACGGTGACGGTCACATCGTTCCACCCACCAAATACG 1756483 33 100.0 34 ................................. AGGGACTTGACGTAGAAGTCGCCGAGGGTCTGCG 1756416 33 100.0 35 ................................. CTCGCCCGGCGGAATCCCGTATCGAAGTAAAGCGA 1756348 33 100.0 34 ................................. GAGCTTTCTGATGGCGCTCGGATCCCAAGTCACG 1756281 33 100.0 35 ................................. CTGTGTGGTCATGCCGCAGGCTTTGGCTATGCGTT 1756213 33 100.0 35 ................................. CAGAACATCGAAACGTACTGTCCAGACTGGATGAC 1756145 33 100.0 33 ................................. ACTGTCTGGGGGTATGGGGGCTAGGAGTTTGTC 1756079 33 100.0 36 ................................. TCTCCACGAAATACGACGGCGGCGCACATGTGCCAT 1756010 33 100.0 34 ................................. AATCCGACGACGCCAGCGGACACGCCGCCACGCC 1755943 33 100.0 34 ................................. AGCACGTTTGCTTTCATAGCATCGGTGAAACCCG 1755876 33 100.0 33 ................................. CGAAATGTCTTTTCGACAGGCATTACGTCACTG 1755810 33 100.0 36 ................................. ATCGCAGGCAAGGGAGCGCAGGACGGCGCGAACTGG 1755741 33 100.0 35 ................................. TCCATGGCCAAGCCGGCGTCGAGGATGCGCTGCGC 1755673 33 100.0 33 ................................. TAAGGAGCAGCAATGAAAGCCAGCGAACAACAG 1755607 33 100.0 35 ................................. AAATGGGAGAACAGCGGCCTGTACACCGGCCTCAC 1755539 33 97.0 34 ..T.............................. ACCATCGCCGCGCTGCTGCTCGTGCCGCACGCCA 1755472 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 1755403 33 100.0 33 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATAC 1755337 33 100.0 34 ................................. AGCGTGGAGTGGGAGCGGGCCGGGACGGAGCAGG 1755270 33 100.0 36 ................................. CTCCGGGGATTGAAAAGCGCATGGGACGGCGTGACC 1755201 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 50 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACTCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGACCTATCGGCCGGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //