Array 1 4431-4036 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBB01000125.1 Shigella boydii strain ECH+10 NODE_18_length_87556_cov_101.343_ID_35.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4430 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 4369 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 4308 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 4247 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 4186 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 4125 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 4064 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93453-92326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBB01000077.1 Shigella boydii strain ECH+10 NODE_9_length_115570_cov_91.7805_ID_17.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93452 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 93391 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 93330 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 93269 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 93208 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 93147 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 93086 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 93025 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 92964 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 92903 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 92842 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92781 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92720 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92659 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92598 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92537 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 92476 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92415 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92354 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //