Array 1 654303-654855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072665.1 Campylobacter fetus subsp. fetus strain CITCf02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 654303 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 654368 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 654434 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 654499 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 654564 30 100.0 35 .............................. TACTAAATTTAAAGGTAGAAAACTTACTAATTATG 654629 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 654695 30 100.0 35 .............................. CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT 654760 30 100.0 36 .............................. CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG 654826 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 37 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGATCATATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGCAAATATGGCGTAAAACACTACAAAGTGGTAGCTAGGATTGATAACCGCACAAGTGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTTGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACAGGCGTGGAAAGAGTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 666903-668573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072665.1 Campylobacter fetus subsp. fetus strain CITCf02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 666903 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 666968 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 667033 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 667099 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 667163 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 667229 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 667296 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 667362 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 667427 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 667491 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 667557 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 667622 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 667688 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 667755 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 667820 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 667886 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 667952 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 668018 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 668084 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 668149 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 668215 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 668281 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 668346 30 100.0 36 .............................. AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA 668412 30 100.0 36 .............................. AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA 668478 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 668544 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTGTAGCAATATATTTAATATTTGCATTATATCTGCAAACTTTTAAAATAAACTTAAAAAAGGATTAAAATGATAAAAAAATTAACAGATAAACGGCTATCTGAAATAACAAAAATCCCTTGCGGGACGATAGCCGGTTGGAAGAGGTCTGATGGTTACAAAAAAGATATATATCTTTTCTTTAAAAACCTAGACCCGGAATTTTTAATAGAGAATTTTGGGGCCAAAACTCCTATAATTCCTTTGCTAGATAAAGAAGTAGTAGGCGCAATAGGTATTTCGCAAGGCACCCTGTATGGCTGGAAAAATGGGAAGGGGCATAGAAAAAAGCTATATGATTTTATAGCGCAATTTAGCGCAAAAGAGATTTTAGATATCTGTGCAAAAGAAAAAGATAGCATAAATGATAAAACGCTCTCAAAAATAACTAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //