Array 1 212209-214066 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIS01000004.1 Salmonella enterica subsp. enterica serovar Hadar strain 3186 3186_4_length_441314_cov_44.5546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212209 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 212270 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 212331 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 212392 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 212453 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 212514 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 212575 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 212636 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 212697 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 212758 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 212819 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 212880 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 212941 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 213002 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 213063 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 213124 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 213185 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 213246 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 213307 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 213368 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 213429 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 213490 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 213551 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 213612 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 213673 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 213734 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 213795 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 213856 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 213917 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 213978 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 214039 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230748-232487 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIS01000004.1 Salmonella enterica subsp. enterica serovar Hadar strain 3186 3186_4_length_441314_cov_44.5546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230748 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 230809 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 230870 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 230931 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 230992 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 231053 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 231114 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 231175 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 231236 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 231297 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 231358 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 231419 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 231480 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 231541 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 231602 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 231663 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 231724 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 231785 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 231847 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 231909 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 231970 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 232031 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 232092 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 232153 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 232214 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 232275 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 232336 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 232397 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 232458 29 100.0 0 ............................. | A [232485] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //