Array 1 2829-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRH01000031.1 Actinomyces naeslundii strain F12B1 F12B1_contig033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2828 29 96.6 32 ............................G CAACTTGCTGAGGGGCGCCCGGCGATCGCTGA 2767 29 100.0 32 ............................. CGCCTGGTGGACGGTACGCAGGCACATTAACT 2706 29 96.6 32 ............................G AGGACCGCGGCCCGCCTATGCTCCTGCTCAGA 2645 29 100.0 32 ............................. TGCACATTGCGTAGTGACATGGTGAATATCCA 2584 29 100.0 33 ............................. GGGCCAGTCACATGCATCTCGCTGGACAGGAGG 2522 29 100.0 33 ............................. GGGCCAGTCACATGCATCTCGCTGGACAGGAGG 2460 29 96.6 32 ............................G TATTCAAATAATGCCACATCTCGAAGCAGGAC 2399 29 96.6 32 ............................T GGCCTTGATCGCAACTTTCTTGTGCTGATCAT 2338 29 100.0 32 ............................. TTGCCGTAGAGAGAATTCAGGTGGAGTTTGGC 2277 29 96.6 32 ............................T GAGCCGTCAAACGCCAGGTTGTGGAAGTACGT 2216 29 100.0 33 ............................. CGTTACCACTGGACGGGACTGCCCGAGGAGATC 2154 29 96.6 32 ............................G GGGAGTACGCTCCGGAGGAGTACGGCCTCCGC 2093 29 100.0 32 ............................. AGCTGGAAGGGCGGCTATTTCCGCGGGATATC 2032 29 100.0 32 ............................. TGCTCACCTTTCTTGATCGCGTTCGAGATAGC 1971 29 96.6 32 ............................G GGTGTCACTGTCTGGCACTCACCGCCGCAGAA 1910 29 96.6 32 ............................T CGGAAACGCGTTATTGCGCACGATCAGGTAGT 1849 29 100.0 32 ............................. TTACCGGTACTGTCGTTGAGCGAACTAATCCA 1788 29 100.0 32 ............................. TAGGAGGAGATCATGGCGGGAATTTCCCACTA 1727 29 96.6 32 ............................T GTTGATAATCGCGTCGCGGTGGGCCTCGATCA 1666 29 96.6 32 ............................T AGGTGTGGAGGTAACGCCTCCCTGGACGGGGT 1605 29 100.0 32 ............................. CCGTACTTGGCGTTAATCCACTCACACGCATA 1544 29 96.6 32 ............................T CTTCTCCGCGGTCGCGTTCAGAAAGCGGGTCA 1483 29 100.0 33 ............................. CCCCCATCCCCGGGATCTCGCGCTCCCAGCGCT 1421 29 96.6 32 ............................G GCCTTCTCCAGGTCCGTGCGGTCCTGGTAGGC 1360 29 100.0 32 ............................. TGGTCTATGGTCTCGTGCCCGATCTCGTTATA 1299 29 96.6 32 ............................T ACGCATGAAGGCACTCATCTCTGACCCCTTCG 1238 29 96.6 32 ............................G CAGAGTGAACTGCCGAAGCCACCCGAGCCGCC 1177 29 96.6 33 ............................G GGACCGTGGTCACGCTCCACGCCGCCACCGACC 1115 29 96.6 32 ............................G GCCGACCAGACGTTCGCGACGAAGGCGGACCT 1054 29 96.6 32 ............................G CCGTGGGACCCGATCGAGGCGACGCCGGTCTG 993 29 100.0 32 ............................. GGGCCACCGGGTTGCGGGCAGTCGTCTGCGCC 932 29 96.6 32 ............................G GACGGCCTCAGCCGTGACGAGTTCTTCGATCT 871 29 96.6 32 ............................A TGACGCTTTTCAGTCAGGGGCTCGCAGTCTTT 810 29 96.6 32 ............................G TCCGCCCAGATGCCGGCTACGTTCAGGCCGGC 749 29 100.0 32 ............................. ACATTCAACTACCTGATCGTGCGCAACAACGC 688 29 100.0 32 ............................. AGCCTGTACGTGCCTGATGCCTCCACCGTGAA 627 29 100.0 32 ............................. CGGCTGCACGTAGGACTGGAACCACCCGACGA 566 29 96.6 32 ............................T TCAACGCGGCGGTGATGGACCTTGGTATGACG 505 29 96.6 32 ............................G TTTTTCCAGCAGTGGCCGCAGTTCGCGAGGGG 444 29 96.6 32 ............................G TCCGTGACGTTCGTGCCGAACCCAAGCTGCGG 383 29 100.0 32 ............................. TACTTTATGGGTCAGGTGTCGAGCGACATCAA 322 29 96.6 32 ............................G GCGCTTGTCCAGGCGGACAGCAGGTCATCCCC 261 29 100.0 32 ............................. ATCATCAAGTCAAAGGACACCAGCGGCGTTGA 200 29 96.6 32 ............................A TCGCTTCCAATAACTCAACACAAACCTTCTTG 139 29 100.0 32 ............................. TTCGGAAAGGCCGCCTGCCAGTTCTGCGAGTT 78 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 46 29 98.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCTGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GCGTGAGCAGGGCCTCATCGACGTAGGCCCCGCGTAAACCCCGCGCGAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //