Array 1 358821-358289 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWEX01000006.1 Nitrospira sp. ND1 isolate Nitrospira sp. strain ND1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 358820 37 100.0 34 ..................................... ATGAGCCAGACGATGAGGCCGTCGCTGGAATCCC 358749 37 100.0 34 ..................................... TATGAAGTGGGCCACGGCTTCACGATGGGCCTGC 358678 37 100.0 34 ..................................... TTAGAAATCCGAGAGAGGAAACCATGGGTAAACC 358607 37 100.0 33 ..................................... CACCGACCTGGACACCACGCCGAGCCTTGCAAT 358537 37 100.0 34 ..................................... AAAAGAGCTACGCGCACAAGAAGCTACTCCCGCC 358466 37 100.0 34 ..................................... CCGGGAACTTCGATGTGTTTCCGTACACTCGCTG 358395 37 100.0 34 ..................................... ACACAAGACACCACAGCGCCCGACTTGGAGCGTT 358324 36 83.8 0 ..........................CT-.C.C...G | ========== ====== ====== ====== ===================================== ================================== ================== 8 37 98.0 34 GTAGCGCCCGTCCTTAGTGACGGGCGAGGATTGAAAC # Left flank : TGTATCTGGCCGTGCTGCTGGATCTGTACTCGCGTGCCGTCATCGGCTGGGCGATGGGCCCGCGCTTGACCGGAGAGTTAACCGAACAGGCCCTCCGCATGGCGCTCGCCACGCGGCAGCCCTCAGCAGGACTCCTGCATCACTCCGATCGCGGGGGGCAATATGCGGCAGGGGCCTACCAGCAGTTGCTCACCACGTATGGCATCACGGCCAGCATGAGCCGCACCGGCAATTGCTGGGACAACGCCTGTGTCGAGAGCTTCTTCGGAACATTGAAGCGGGAACTCGTGTACCATCGGCACTATGCCACACGAGCGGAAGCGAAACAGGACATCTTCGAATACATCGAGGTGTTCTACAATCGGACGCGTCGGCACTCGACCCTCGGCTATGACTCCCCGGCCGAGTACGAAGCGAGGGCCGCAGTCGCGTAACCTGGTGTCCATGAAACTGGGGGAAGGTCACTTTCGGCTTGGCGTGACAGAGAAAGAGCACGTCCC # Right flank : AACACCATTCGCATGTTCCCCGCGCGAGTACCCGTGATCCCACGATGCTACCTACGGGCTAGGCCATTCCGAGACATCTGAAAATCTTCAATGCCGATTCCAGCGTGATGCTCGTTCGTTGCTGCTCGAACGCATTCACGGTCGGCCCGCTGACGCCCGCGAGGACGGCCAATGTCTTTTGCGTCAACTTCTGTTCCTTGCGCCGCTTTACGGCTTCTTCGACAAGGCGTGGCCAATCAAGGCGAAGGTTCCGTTCCATCGTTTTTCCATGAAGGTGATGATGGCATCCCGCAATTCCGGGGTGCCGGTGGTGCTTTCAGCAATCGCGTTCCTGGCCGCTTCCCGCCGCTTTTCTAGATGCCCGGCGGCCATGGCCATGGCCGGCTTCGATAATCCGAACTCTTCACCCAAACGGATGAGCGTTCGCGCCTTGACCTCGCTGATGGGAATGTGGGCGCTGCCGCCTATCGATAACGCGATGGTGTTGTACCCGTATAACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGTCCTTAGTGACGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.10,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 361864-360109 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWEX01000006.1 Nitrospira sp. ND1 isolate Nitrospira sp. strain ND1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 361863 37 91.9 37 ...............C.G.G................. CGTTGATAAGTTGACTCGATTGGTGCAGCAACTCACC 361789 37 91.9 35 ...............C.G.G................. AATAATAGTTGGCAATTCGTGACCATCGTAGACGC 361717 37 91.9 34 ...............C.G.G................. TGGCTTATACATTTTCGTTTCTCCTTCGTTCTAA 361646 37 91.9 34 ...............C.G.G................. TTACACAGCGCGAGAAGATCCCCCTCAGTCTTCA 361575 37 91.9 35 ...............C.G.G................. TCTTCATAATCGGCTCCGGCGGATGCGGCTTTCCA 361503 37 91.9 34 ...............C.G.G................. CGTTTATCGATCAGGACAAGTTACGCCGCTCATC 361432 37 91.9 35 ...............C.G.G................. CCCAGATTCTCACCTTCCCAAACCTAAACCCTCCC 361360 37 91.9 35 ...............C.G.G................. GGCATCGCGCCGATGCGGCGCTCCAAGCGCATGAG 361288 37 91.9 35 ...............C.G.G................. GAAGGAAACCGCGCACCCTGGCCGGTGGTGACGGC 361216 37 100.0 34 ..................................... CTGTCCGCCCACTCGCATCACATCCGCTTTGAGC 361145 37 100.0 33 ..................................... GTCATAGCGTGGCAACTCACCGTGCAGCTTGTA 361075 37 100.0 35 ..................................... TATTTCTATATGATGTACTACGTCGCGCCGAGGCC 361003 37 100.0 35 ..................................... TGGATCAAGCCCATGACCAAGAATGGCGACGTGCA 360931 37 100.0 34 ..................................... CAGCGTGACACGGTTGATTGTGGCCCCTGCGGCC 360860 37 100.0 35 ..................................... ACGGAGAACCGGCAGTAATGCATCAACGCCTCGCA 360788 37 100.0 36 ..................................... CAGTACAGCGAAAGAAATTCTGCCAACTCATCGGGC 360715 37 100.0 36 ..................................... CACAGGGGCAGGACGCCCCACCGCTGTGGCGAAACG 360642 37 100.0 34 ..................................... GATGACAATAAGCCCTTTGCCCGGTGGTTCTGCC 360571 37 100.0 34 ..................................... AAGTCGGAAGCCATTAAGTTCTACACCAACTATC 360500 37 100.0 34 ..................................... TGGCTGAGAGGCTCATTAGTTGTTACTCCCTGCC 360429 37 100.0 34 ..................................... CGACAAGCGTTTGCCCCTGGACAAGCGTGCGCCC 360358 37 100.0 34 ..................................... GGGCTCGCGCTGCGCTGGCTCTTATGTCGCTCAA 360287 37 100.0 35 ..................................... AAGGCGGAAACCCACTGGTGCCCGCGACTCCACAG 360215 37 100.0 33 ..................................... TTAGATTCCTCGGCTGATCGGATCATTGTTGAT 360145 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 25 37 97.1 35 GTAGCGCCCGTCCTTAGTGACGGGCGAGGATTGAAAC # Left flank : ATCCGCCGTTTTTGTACCGGTAGGAGGGTGCATGAATGTCTTGATCGCGTATGACGTGGCAACGGAATCAACAGGAGGGCGGCGGCGCTTACGCAAGATCGCGCAAGCCTGCCAGGATTTCGGGCAACGCGTACAGAAATCGGTGTTCGAATGCGCGGTCACTGAGATGCAATTTGAAGAACTTGTCCGGCGCCTTGTCGAGATCATTGATGAGAAGGAAGACAGTTTGCGGGTGTATCGATTGGTAGAGCCCAAAGAAAAGTATGTACAGGTGTTTGGTGTGGACACGTCAGTCGATTTTGACGAACCATTGGTTTTGTAAACGCGAACCAGAAGCGCTGCCAAATAGGGCCTGGGATCGCGCAGACGAGAAGAGCGCGAATTGAAAGGAGATTTCATCAGGTGACACCCAACCATTGTCGCCGCCCCCAGGTGATTCCGGTAGGTTCGCGCCGACCGCAGGCAAACCTCTCGGGAAATCATGGGTTTTTGTTCACGCG # Right flank : TTTGACCTTCCCCCGATTTCACAGACACTTCCATACGTGGGAGAATGAGGAAATCGGAGGACAGGATGAGCACGAAGACACGACGGTCGTATACGGAGACGTTCAAGGAAGAAGCCGTGCGGTTAGTCCGGGAGTCAGGGCATCCCGTCGCCCAGGTGGCGCGGGATCTGGGGATTGCCGATCATCTCCTCTACCGATGGCGAGCGGAGCAGCAGCAGGCAGAAGAGCGTGGACAGACCCGACAATCTTTACAGGTCGAGCAGGCGGAACTGGCCCAGCTGCGGCGTGAAAATGCCGTGCTGAAGCAGGAGCGGGATTTTTTAAAGCGTGCGGCGGCGTTCTTCGCGAAGGAGTCGCGATGAGATACCGAGTCATTCAGGAACACGACCGTCGCTATCCGATCCGCCTCATGTGCCGAGCACTGGCGGTTTCCCCTGCGGGGTATTATGCGTGGCGCGGACGTCCCGAGAGTCGGCGGGCCGCCGCCAATCGGACCCTCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGTCCTTAGTGACGGGCGAGGATTGAAAC # Alternate repeat : GTAGCGCCCGTCCTTCGGGGCGGGCGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.10,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //