Array 1 888810-891416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028146.1 Mycoplasma gallisepticum strain f99 lab strain chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 888810 36 100.0 30 .................................... ATTTACGAGCTAATTGGACTTAAGTAAATA 888876 36 100.0 30 .................................... ATTTTAGCGAACCTAACTGATATTGTTACT 888942 36 100.0 30 .................................... ATCAACAACTGTATCAACGCTTTCTAACCG 889008 36 100.0 30 .................................... AAAGTGAAACTTGAGTAAGTCAAGTTACCG 889074 36 100.0 30 .................................... TTATTGAACAACTTAAAACACTTGACAAAC 889140 36 100.0 30 .................................... TATCCCCGAAAACATAAAAAACATTCAATG 889206 36 100.0 30 .................................... AACATCTAGACTTGACAAATAACGTTCGAC 889272 36 100.0 30 .................................... AACCGAACGAACTTTTTCAAACTTAAGAAT 889338 36 100.0 30 .................................... TTGCCCATATTTGGTTTATGGTAGTGTACT 889404 36 100.0 30 .................................... AAATTTTAGTGATGGATCGTCAGTTGTTCA 889470 36 100.0 30 .................................... ATTTTAAAGATAAAACTGCGCTTGAAGTGG 889536 36 100.0 30 .................................... CAAATTTAAAACACGTTTATATTTTTGACA 889602 36 100.0 30 .................................... GCAGGTATATATATAACAAGTCAAGCGCGT 889668 36 100.0 30 .................................... GAAAACGTCATCTTAACGACTTCGTTGTTG 889734 36 100.0 30 .................................... ACTCGATCATTTTTTCAGCTCAAAATTTAG 889800 36 100.0 30 .................................... TGAATCCATAGGAATTATTTCATCAAAAAT 889866 36 100.0 30 .................................... TTTTATTCCAGAAACTCTTAAAAAAGTTGA 889932 36 100.0 30 .................................... CCTTGAGCACTTGAACGATGATTAAAATAC 889998 36 100.0 30 .................................... AAATGCAACTTGTTTTCAGCTGCAAATTTA 890064 36 100.0 30 .................................... GTAATGTTTGGAATTGTTAACTTGTCACTT 890130 36 100.0 30 .................................... GTTTAATGGTTATGACCAGATTTTGATACC 890196 36 97.2 30 ...............G.................... CACTTTAACAACACAACAAACTGAGTTAGT 890262 36 100.0 30 .................................... AAAGTGAAACTTGAGTGAGCCAAGTTACTG 890328 36 100.0 30 .................................... GACCGAAAAAATATTACCCACGTTTGGTTT 890394 36 100.0 30 .................................... ATTAACGACACTAACGCAGTTGTAAAAATT 890460 36 100.0 30 .................................... AAATTACGATTTTTTATTCCCGAAACTTTT 890526 36 100.0 30 .................................... TGATTTGTGTAAGTAATACTTGTCGCGCTT 890592 36 100.0 30 .................................... CAGCGCTTGAAGTCGTTGAAAAGATCAATA 890658 36 100.0 30 .................................... TTAATGAACAAGACTATTTAGGTCTTTTAA 890724 36 100.0 30 .................................... AAATACTCGCAACTTTTTTAATGTTATAAG 890790 36 100.0 30 .................................... AAGATCACTAACCATCAAGTTCGTGTTAAT 890856 36 100.0 30 .................................... AAAAACGAAGAAAACTTAAATAAATTTATT 890922 36 100.0 30 .................................... CACACACCAAAGATAAGTCGTGACTAGCTC 890988 36 100.0 30 .................................... TAGTTGATAGTTATTTAGACTATTTTGCTG 891054 36 100.0 28 .................................... TGATCAGAGTTATGCAGAATCATTATCT 891118 36 100.0 29 .................................... ATCGGAATGTTTTTATTGTTGATCCTGAA 891183 36 100.0 30 .................................... TTTTTAAAGTTAATTTTAAAAAAATCTTAA 891249 36 100.0 30 .................................... AGACCTATAACCACAACTTACTATTTAGTT 891315 36 100.0 30 .................................... TTATTAATAAACCTCTCTAAATTTTGTGGT 891381 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGTCGTGATATTATCTCGTTAGATACTTCTTACTCTAAGATTCTGAAATCAATAATAAAGATTTCAGAAGACTATATAGATCATGAATTTATCTATTCATATTTAGAATTATTACATTGATCAAAAGAAGTTAAAACAGTTATTCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTAAGTAACTTAACTCAAACTACTAATTTAATTATTATGAAGAATGATATTATCTATGATCTTGAAAAAAATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGGCCAATATGTCTTTTCATCAGCTAGAAATAATTAAAAAAGAATTAAAAAAGCAGATTAATTAGCTTATTTTATTTGACAATGAG # Right flank : CAAAAACAAGTATTTATCTATAAACAAAAAGTTTTATCATTAAACATATTTAATCTAAAACAAAATTTTAAATAACTAAACTATTACTTAATTTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGATAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGGATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCTTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATGCTTGCTTGATTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATCCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //