Array 1 89863-88554 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEY01000040.1 Escherichia coli strain 94-J43-A entry40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89862 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG 89801 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG 89740 29 100.0 32 ............................. TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT 89679 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT 89618 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 89557 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC 89496 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA 89435 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG 89374 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT 89313 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTTACAACTAA 89252 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT 89191 29 100.0 32 ............................. GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT 89130 29 100.0 32 ............................. CGCTGGCGGTGCGAGTGCTGGAGGCGCTGAAA 89069 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 89008 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTCCACGTA 88947 29 100.0 32 ............................. CCTGTTTTTTGTGCGGGGAATTATGGGGGAAT 88886 29 100.0 32 ............................. TTATACTGATTTTGATTTGTATTTCGGTCGCT 88825 29 100.0 32 ............................. ACACGCCCTGCCGTATTTACTGACGCGCAGGA 88764 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 88703 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 88643 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 88582 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 314-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEY01000184.1 Escherichia coli strain 94-J43-A entry184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 252 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 191 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 130 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTAATAATAGGTTATGTTTAG # Right flank : GAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //