Array 1 3121867-3119902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039572.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014855 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3121866 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3121805 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3121744 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3121683 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3121622 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3121561 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3121500 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3121438 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3121377 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3121316 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3121255 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3121194 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3121133 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3121072 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3121011 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3120950 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3120889 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3120828 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3120767 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3120706 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3120645 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3120583 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3120480 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3120419 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3120358 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3120297 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3120236 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3120175 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3120114 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3120053 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3119992 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3119931 29 96.6 0 A............................ | A [3119904] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3139491-3137998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039572.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014855 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3139490 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3139429 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3139368 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3139307 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3139246 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3139185 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3139124 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3139063 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3139002 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3138941 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3138880 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3138819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3138758 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3138697 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3138636 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3138575 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3138513 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3138452 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3138391 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3138330 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3138269 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3138208 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3138147 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3138086 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3138025 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //