Array 1 1088709-1088453 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812882.1 Rothia sp. HMSC068E02 Scaffold53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1088708 36 91.7 37 NNN................................. TGTGAGCGCTAAGCCTGCTACTCGTTTGTATGATGGC 1088635 36 100.0 37 .................................... AGGCTGCTGATAATTGGCGCGAGTTTTTCCGTCAGCG 1088562 36 100.0 38 .................................... ACCATCAATAATACGCGCAACCGCCACACCCGGCACGA 1088488 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 95.8 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : AGCACGCAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGAACGGTAGGGGAGGTACCCCTCCCCGGGGAGATGAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCAGAAGCAGTACCGAGAAGACCGCCTAGCACGCAAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGAATTTGAGCCGAAAGGGTCGCGCACTGAAGTTTGCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGGGGTGTAACAGAATCTAGTGGAGGTCTTGCTATCGGAGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTCCTGATGATGCAGTCGGGGATTCAGCCCCAGCAATTTCCCTTCCTTTTCGGAGGGACTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTGATTTGCTGTTCGGTGCCGCCGGTCGGCTGCAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCCCACGGGTGGAGAGGCAACCCACCCGGTGCGGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCAAAATTCGCGGGTGTTCGCCGTGCGGTTGTAAATTTCCCTTCCTTTTCGGAGGGACTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCATCTGACGCGCGAAGGAAAGGCTGCGGGGCTGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1088872-1089272 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812882.1 Rothia sp. HMSC068E02 Scaffold53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 1088872 38 100.0 36 ...................................... CCGATAGCAAGACCTCCACTAGATTCTGTTACACCC 1088946 38 94.7 34 ....................................GC AAACTTCAGTGCGCGACCCTTTCGGCTCAAATTC 1089018 38 100.0 34 ...................................... TGCGTGCTAGGCGGTCTTCTCGGTACTGCTTCTG 1089090 38 100.0 35 ...................................... TCATCTCCCCGGGGAGGGGTACCTCCCCTACCGTT 1089163 38 100.0 34 ...................................... TGCGTGCTAGGCGGTCTTCTCGGTACTGCTTCTG 1089235 38 94.7 0 ....................................AA | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 98.2 35 CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCGTGCCGGGTGTGGCGGTTGCGCGTATTATTGATGGTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGCTGACGGAAAAACTCGCGCCAATTATCAGCAGCCTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGCCATCATACAAACGAGTAGCAGGCTTAGCGCTCACACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGCTGGGGCTGAATCCCCGACTGCATCATCAGGAG # Right flank : AAAATGTACCGCCCCCAATAGGTGCGGTACATTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGTCCCTCCGAAAAGGAAGGGAAATACAACCCCGGAGTTCACATCCACCTCACCCAAATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGGGGGTCTTCTGCGGTGTCCTCGGGGTTGGCCTTGTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGGCTCACCTTGGGCACGAACCCGAACGCAGTTGAGGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.70,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //