Array 1 128781-127326 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNPR01000007.1 Listeria monocytogenes strain V1893 V1893_contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 128780 29 100.0 36 ............................. TTCATTACAATACGGATAATATTCATGTTCATATTG 128715 29 100.0 35 ............................. TCGCTTGTGTATAAACACAAGTCTACCGCAACACC 128651 29 100.0 34 ............................. TAACTTAAATAAGCATAAGGAAATGCCGCGCATG 128588 29 100.0 36 ............................. GTAGCTAGCCCTTGCGGTCCAGATGGCGCTTTGCCG 128523 29 100.0 36 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTATCC 128458 29 100.0 34 ............................. AGATAACGGGGAATTGGTACACGGATACTTTGTC 128395 29 100.0 35 ............................. CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT 128331 29 100.0 35 ............................. TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG 128267 29 100.0 35 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC 128203 29 100.0 37 ............................. CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT 128137 29 100.0 36 ............................. AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA 128072 29 100.0 36 ............................. TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC 128007 29 100.0 35 ............................. CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC 127943 29 100.0 37 ............................. TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT 127877 29 100.0 36 ............................. TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA 127812 29 100.0 35 ............................. CCGGAAAATTGTGATTTAATGATTAGCAATCCACC 127748 29 100.0 37 ............................. AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG 127682 29 100.0 36 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT 127617 29 100.0 38 ............................. AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC 127550 29 100.0 35 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA 127486 29 100.0 37 ............................. TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG 127420 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 127355 29 93.1 0 .......................C....C | A [127330] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAAATTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGTGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGTATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAAATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGTGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAGTAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAGGCCAGGACCCAAATCCAAGACTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTTGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 144330-143845 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNPR01000007.1 Listeria monocytogenes strain V1893 V1893_contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 144329 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 144263 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 144199 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 144134 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 144070 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 144005 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 143939 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [143915] 143873 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 93.5 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAACAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTGAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //