Array 1 37142-36502 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820091.1 Rothia sp. HMSC065D02 Scaffold134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37141 29 100.0 32 ............................. ACGCGCAGCCGTAGTATCCGCCCAAGTATTAA 37080 29 96.6 32 ............................T CAGACCCGCTAGTGTCCTTAAAAGTCAAGTCC 37019 29 100.0 32 ............................. CACTCTCTACCCGAGTTACGAGCGGTAATGTC 36958 29 100.0 32 ............................. CGCCGCTGAAGAACCGCAACAGAAATTCAGCC 36897 29 100.0 32 ............................. ATCTGAGTTCAACTCAGCAAATGCCGAATGGG 36836 29 100.0 32 ............................. TTGGATGCCGTCTACGAAGCTATGAACAGCGT 36775 29 96.6 33 ............................A CTTACCGCTAAGAATCCTGAGCGGTACGCAAAG 36713 29 100.0 32 ............................. CACATACATCGTGGCTCTAACTTTTGACCCTA 36652 29 100.0 32 ............................. GGATGATGTCATGCAGTTCTTTTACTAACTCT 36591 29 100.0 32 ............................. CAGCAAATCAACTCTGGCCGTCAACCTCGCGG 36530 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Left flank : GGAAGAATGTTGCCCAAAAGTCTGGGTTGAACCGGGTAGTTTTGGATGCGGCATTCGGCGTGTTCCGTAACCAGCTGGAGTATAAGGCTGTCTGGTATGGTTCTGCGTTTGAGAAGGTTGACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGTGGGAGGAAAGCGAAAACCAAGCTGACTCTGCGCGACCGTGTCTTCGACTGTGCGTACTGTGGGAATATGATGGATCGTGATCTTAACGCGGCCGTCAATATTTGCCGTGAGGCGCAGAGGCTTTTTGACGAAAAACTCGCCTCAGAAGATAGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCTCTTCGGGGTGCTGAGACTGTGGAAGCGTCAAGACCACCTGCGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCATCTGCCCATCTATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGTGGGCGTTATACCTAGTCAGCAAGTGT # Right flank : GGTTCCCACAAATTCTTGGTCTTCTTCAGACCATTCGACGCGGTATGTGTATAGTTCTTCCCGAGGAATAGACATTTTATTCTGCCTCCAATTTCTTACAAAGCAGTTTTGTTTGCTTCTATATGCGTATCTGGAAGTGTAGATAATTGCAGAGGGTGGAGCATGCGCGCGATATAGGGTAAGGTAGCAGCAATCGGGTGAGCACCCAGGTCCGCTAAAACTCTGAGTGACCACCCTGTGAGGACGTTATACTAGCCAGCGGCTAATAGCGTCGACTAACTTAGCGACCGCCTCGATGAATCGTGAACCTGCCTCAACAAGTCGCACGATCGTCCGGGCGGTTTCGCGTTAAAGCTGCACCGCCATTTCGTGCTCAACCAGACACGGCCCAAAGGACTGGTCCACCTTTGTAGCGCCCGTACACCGCCAGCCCTGCCGTTCGTAGAAGCTGATGGCGCGGGAATTTCCCTCCAACACCCAGAGAGTCGCGTGCTCACATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 700880-699937 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820092.1 Rothia sp. HMSC065D02 Scaffold204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 700879 29 100.0 32 ............................. GTCACCATCACCCCACCCGAAGAGGGCAAGCA 700818 29 100.0 32 ............................. TCCTCAAACATCTTCAAGAAACGCTTGCGGTC 700757 29 100.0 32 ............................. CAACGAGCACTGCGGCAACTCTCCACCTACAA 700696 29 100.0 32 ............................. AAGACTGTACCGTCTTAGATGCATATAAAATC 700635 29 100.0 32 ............................. TGCCCGCACGGGCGGCGTAACCGGCCTTGACC 700574 29 100.0 32 ............................. AGTATTCCGTTTCATGTGTCCGTTTCCTTTTC 700513 29 100.0 32 ............................. AGCTTGAAGATACTCGCCAGCGACAGAATACG 700452 29 100.0 32 ............................. GATTACGCGCACTAACCACCGCCGGCGCTCTG 700391 29 96.6 32 ............................G GAAGAGGTTATGGTTGCTACGGCTGAAGAGTT 700330 29 93.1 32 ..............T.............G ATGTTGGGTACTCGGTAGCCCACAGTCTAGCC 700269 29 96.6 32 ............................G AAAAGCGCTCTATTGATGTTCCTTTAGTTGAT 700208 29 96.6 32 ............................G TGATAAACGGCTGGGACGCAGAACAACAAGCC 700147 29 86.2 32 G.T...........T.............G TCGCTTAGAGGAGCATTCTGTGGCTTCTGATG 700086 29 86.2 31 G.T...........T.............G CACCACGACGACCCGATAAACGTTTACAGGG 700026 29 86.2 32 G.T...........T.............T AACAGCGATAACTAATATAGCCCTGGAATACC 699965 29 72.4 0 G.T...........T........A.CTGT | ========== ====== ====== ====== ============================= ================================ ================== 16 29 94.6 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GACGATGGGATGTTCCCCGCACCCGCGGGGATGAGCCCTTTCGTACCACGCCGTCCTTACCTCGAAGTACATGTTCCCCGCACCCGCGGGGATGAGCCCTTTTCCCCAGCACGGTAAAGCGCTACCGCCTCATGTTCCCCGCACCCGCGGGGATGAGCCCTCTAATGCCCTGAGAACCACAGGGTGAGACGCATGTTCCCCGCACCCGCGGGGATGAGCCCTACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATATGTTCCCCGCACCCGCGGGGATGAGCCCCCGGTATTGCAGGGAAGTACGGGGTATGGGGG # Right flank : TCAACAGTATTGAGGAATTTTCCATTGGTTCCAGTGACGTATATCATACTTACTAGAGTTGGTGGGGTATTCCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGCCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACTTATATAACCTTTTCAGCAAAACCTAACCTGCTCGCGTCATAATGTGAATAACCAGAAACGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACAGCCCCGCTCGGCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : TTCCCCGCACCTGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 703811-701159 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820092.1 Rothia sp. HMSC065D02 Scaffold204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 703810 29 100.0 32 ............................. GCCGGGCCGAGGGATTTAAGCGCATCATTAGC 703749 29 100.0 32 ............................. TTCCTTCTCGTAGAGCGCGATGCGCAGCGCCT 703688 29 100.0 32 ............................. GAACCATTCTCGGTTAGCTGAGGGTACAAAAA 703627 29 100.0 32 ............................. CTCCACAGCACCGAATCATCACAGAATAATTC 703566 29 100.0 32 ............................. CTAGCATTGGAACGATAAAGAAGGTTCTGCTA 703505 29 100.0 32 ............................. CGGGTGAATTTATGATTAGTGCCCGTGGCAGG 703444 29 100.0 32 ............................. CTCATGGGCACTCGTACCAACAGTAGGCGAGT 703383 29 100.0 32 ............................. ACCAACGAGCGGTGCCGTGAGAAGGCTACTGA 703322 29 100.0 32 ............................. ATCCTTGATAATGACGCATGGCTTACGATAGT 703261 29 100.0 32 ............................. TTGGTATGCAGAAGGCAATACAGCATACCTAG 703200 29 100.0 32 ............................. TAAACACAATGCGAGCGCTCTACACGATCGCC 703139 29 100.0 32 ............................. GAAGACCTCAAGTTGCTACGTAATGAGTTGGA 703078 29 100.0 32 ............................. CAATGACTTACGATTATGTAATGACGTGGGTA 703017 29 100.0 32 ............................. AAACCCCGGCGACACACTCCGCCACCTCGTGC 702956 29 100.0 32 ............................. ATTTCCATTAGCAGCGAACTTCTATCTGTGAA 702895 29 100.0 32 ............................. ACCACATCAGAGGGAGCGAAAACCATTGCGGA 702834 29 100.0 32 ............................. AGGTTTCGGCTTGATTCACATGGACTTTACCT 702773 29 100.0 32 ............................. GATGGGGTTTCCGCTGATGACTTGGGTGCACA 702712 29 100.0 32 ............................. GAAACATTGCAGTCCCGCATGGATTCGATGGA 702651 29 100.0 32 ............................. CAGTAAGCACGGTGGTGCAGGTCGAGATTTCC 702590 29 100.0 32 ............................. CGTCGACGGTTTCGCTGCATACTCCTCTTAAT 702529 29 100.0 32 ............................. TACAGGTAGTTTCTGAGGTTCTTGATAAGGAC 702468 29 100.0 32 ............................. TCTTGCGCCTTCGATAGCCGCCCGTTCTCGGT 702407 29 100.0 32 ............................. CCTCGCCGGCGACATCGACTATGTGCACATCA 702346 29 100.0 32 ............................. CGCACTACTCGCCATGCGCGCCCTCGGCATCA 702285 29 100.0 32 ............................. ATCTGTGCCTGAACCTGCGCATAGTATCCTAG 702224 29 100.0 32 ............................. ACAGTTCAGGAACGATATCAAAAAATCCGTCA 702163 29 100.0 32 ............................. AAGCCTCCATCCTCTCAACAGCCACCGGCGCA 702102 29 100.0 32 ............................. GGTAATAAGCTCTTTCAGCTCACGAACGGCGC 702041 29 100.0 32 ............................. TGGATTGGGGGCCACATCAGCAAAACGATGGG 701980 29 100.0 32 ............................. CCTAAAGCGGCTCTTGAAGAGCTGGAACGGTC 701919 29 100.0 32 ............................. AAAGCAGAAATGCTAAATCGCTGATTGACAAA 701858 29 100.0 32 ............................. AGTGGAGCAGCTTAACGCGGCTGTGAGTTCTT 701797 29 100.0 32 ............................. CCACGGGGGCACCAGTCCCGACAGCACGCGGC 701736 29 100.0 32 ............................. GTTCTTCCTAAACCGTACAAACCGGTCAGGGA 701675 29 96.6 32 ............................A CACGGGTTTCCGCAAGCACCCGAACTTTCGTT 701614 29 100.0 32 ............................. GCCGAAGAAATCTTGAATGCACGGATTTATCG 701553 29 96.6 32 ............................T ATTTTGTGTAGACGGGCGAAGCCACGCCCGGT 701492 29 100.0 32 ............................. TGCCGCTGCGTCATGGCACCACTCCTAAGTCA 701431 29 100.0 32 ............................. TGGATTGGCGACCACATCGGCAAGACGATGGG 701370 29 100.0 32 ............................. TTTCGTACCACGCCGTCCTTACCTCGAAGTAC 701309 29 100.0 32 ............................. TTTTCCCCAGCACGGTAAAGCGCTACCGCCTC 701248 29 100.0 32 ............................. TCTAATGCCCTGAGAACCACAGGGTGAGACGC 701187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : TGTTCCCCGCACCCGCGGGGATGAGCCCTACTGGAAGACATGCCATTTGTGAAAGACACCATGTTCCCCGCACCCGCGGGGATGAGCCCACCTGGCGCAAAAGCTCACCAAAACATTCCGAATGTTCCCCGCACCCGCGGGGATGAGCCCCCTTATTGGTCTGGTAAAACTCAGACGCTTGTATGTTCCCCGCACCCGCGGGGATGAGCCCATGCCAGAGCTTTATGTTTGTCTCTGCATTTCATGTTCCCCGCACCCGCGGGGATGAGCCCCCGAAGCGTCCTTCGGACGTTGAGCGTATGTCATGTTCCCCGCACCCGCGGGGATGAGCCCTGTACAAAGATGACCCGATACTAGTGAACGCAATGTTCCCCGCACCCGCGGGGATGAGCCCTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : TACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATATGTTCCCCGCACCCGCGGGGATGAGCCCCCGGTATTGCAGGGAAGTACGGGGTATGGGGGATGTTCCCCGCACCCGCGGGGATGAGCCCGTCACCATCACCCCACCCGAAGAGGGCAAGCAATGTTCCCCGCACCCGCGGGGATGAGCCCTCCTCAAACATCTTCAAGAAACGCTTGCGGTCATGTTCCCCGCACCCGCGGGGATGAGCCCCAACGAGCACTGCGGCAACTCTCCACCTACAAATGTTCCCCGCACCCGCGGGGATGAGCCCAAGACTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 704312-703917 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820092.1 Rothia sp. HMSC065D02 Scaffold204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 704311 29 100.0 32 ............................. TACTGGAAGACATGCCATTTGTGAAAGACACC 704250 29 100.0 32 ............................. ACCTGGCGCAAAAGCTCACCAAAACATTCCGA 704189 29 100.0 32 ............................. CCTTATTGGTCTGGTAAAACTCAGACGCTTGT 704128 29 100.0 32 ............................. ATGCCAGAGCTTTATGTTTGTCTCTGCATTTC 704067 29 100.0 32 ............................. CCGAAGCGTCCTTCGGACGTTGAGCGTATGTC 704006 29 100.0 32 ............................. TGTACAAAGATGACCCGATACTAGTGAACGCA 703945 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GGGCTCTGGAACGGCCGGGGAGAGGAGCAAGAAAGCGGGTACAACTATGGAGCTGATGAGTGATGATTGTTGTCGTATTATCCGCATGCCCGGTTGGTTTACGAGGTGATCTTACGAGGTGGCTATTAGAAATTAGTGCTGGCGTTTTTGTAGGAAAAGTGAGTGCGCGTGTGCGGGAGCATCTATGGAATCGTATTACGGTTACTTGTAGTGATGGACGTGCTCTTATGGTGTACTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGGGTTAAACTTATGATGCGTCCGTCTACTCCAAAAAAGGGGTTGGTACCTCGAAAAGGATGGAGCAAAGCAAGTCGATATAGGCGTGCTTCACGACGCAGGTAAGAGCATATCGTGTATTCTTGGAAGTAGGTTATGGGCTTTAAACTAATACTAAAACTTGAGGTATGGGGGTAAAACCCCATGTCAGAAAGT # Right flank : TATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTTCCCCGCACCCGCGGGGATGAGCCCGCCGGGCCGAGGGATTTAAGCGCATCATTAGCATGTTCCCCGCACCCGCGGGGATGAGCCCTTCCTTCTCGTAGAGCGCGATGCGCAGCGCCTATGTTCCCCGCACCCGCGGGGATGAGCCCGAACCATTCTCGGTTAGCTGAGGGTACAAAAAATGTTCCCCGCACCCGCGGGGATGAGCCCCTCCACAGCACCGAATCATCACAGAATAATTCATGTTCCCCGCACCCGCGGGGATGAGCCCCTAGCATTGGAACGATAAAGAAGGTTCTGCTAATGTTCCCCGCACCCGCGGGGATGAGCCCCGGGTGAATTTATGATTAGTGCCCGTGGCAGGATGTTCCCCGCACCCGCGGGGATGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //