Array 1 409580-408984 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXDP01000002.1 Clostridium niameyense strain IFR 18/094 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================================== ================== 409579 30 73.3 136 ......A.........TT.AA...AA...T GACAGATGTATTCCATCACCATTAAATTAGTTGAATATTTTACACTTTAAGAAGTATGTATTTAGAGGAGAAATAACTTAGATTTAGTTGCATTAAAATTTTACCAAGTGAATTTTTATAAAGAAAGTCTCCATAT 409413 30 83.3 104 .....T.......T..G....A.......T GTTTAACAAAAAATAAATAATTGCTTGGTAAAAAATCTTCAAAACCCTTGACAAACCTAGCTTTAAGAGTAAACTATAAATTAAGAAATGGCTTGTTTTCAGTG T,A,TT [409383,409390,409405] 409275 30 100.0 36 .............................. TATCTAGTACGCCAGGCATCTTGTTTTCCTCTTTGT 409209 30 100.0 36 .............................. AAGAGTTAAAGATAATATGAATGCTCTTGCTAAAAT 409143 30 100.0 34 .............................. TATTAGATGAGTACCACCAACATCCTACAGATGA 409079 30 100.0 36 .............................. TCATCTGTGGGAAAGTAGTCGGGGGAGAAACGCCAT 409013 30 80.0 0 ..............AG...AA.G......T | ========== ====== ====== ====== ============================== ======================================================================================================================================== ================== 7 30 90.9 64 GTTGAACATTAACATAAGATGTATTTAAAC # Left flank : AATTTTTTTACGTTGATTTTCAGGATAACTTGATATAGTATTTATGTAAGCTTCCATTAAGTATTTTGGAGCATCCACAGGTGGAAACCCAATGAGATGCTTTTTAAAATCGTCATAGGAAACTCCATAAAAGTTTGTTCGCATATAGGTATCAAATAAACGTTTTTCAAAGATTGTCATTTTTTTATAGTTATGTTTCCTTGCAAAGCCTTCATTACCAGTATATTCAGGTACATAATAAGAAAGATATTTTTTAAATTTAGGTTTATTATTTTGTTTGGTAATATTTTTGTCTATTAGCTTATTAGTACTTGAGTACAATTTAGAACTACTAATATTTTGTATCATAGTATCCCTCCTAGTTAATAAATTAAGGTTTAATATGTAAATATAGTATATAACAGAATAAATTTACAAAATCCTAATTTTATAATCGAATAGTTAAAAATTTTCTTCAATATAATACATAAAAATAAATTATCTAATTAAATTAATATTCG # Right flank : AGATATGGAAGCATTGAAATTACTAGCTTTAAAAAATTTCGTCAAAAATTTCGTCAAAAATAATTTTTAAAAAATATTTTCTATAACAGAATGGGCCTTATTTAACATATCGTTATTAACGTGGCTATAGGTTTTAAGTGTCTGCTCAACAGAATGGCCAAGTATCTGTGCAGCAGTTTTAAAATCAATTCCATTTGCAACTAATTTAGTAGCATAAGTATGTCGCAATTCATGGATAGTTATATCAAAGCCGCGTTTTTTTAATTTACCATTTACAATAGAGCAAACAGAATTTGTAGCTTTAAAATTAAGGATTCTATTATTTATATTTATAACATTTTTATGATTTATCAATTCTTTAATTACCGTATGAGAAACTGGAATGGTCCTATTAGAGTTTTTACTTTTTACATCTCCAAAGCCCCAGGTGCCTTCTTTTACCTTTTTCCATTGTTTATTTACAGTTAAAGTATTATTTTTAAAGTCTACATTATCCCAAG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-2.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //