Array 1 258339-259648 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTWJ01000013.1 Escherichia coli strain ECOSOCR1 SQ8_contig_13_94_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 258339 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 258400 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 258461 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 258522 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 258583 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 258644 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 258705 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 258766 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 258827 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 258888 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 258949 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 259010 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 259071 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 259132 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 259193 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 259254 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 259315 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 259376 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 259437 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 259498 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 259559 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 259620 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 285347-286289 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTWJ01000013.1 Escherichia coli strain ECOSOCR1 SQ8_contig_13_94_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285347 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 285408 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 285469 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 285530 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 285591 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 285652 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 285713 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 285774 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 285835 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 285896 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 285957 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 286017 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 286078 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 286139 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 286200 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 286261 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //