Array 1 1785-8775 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPP01000896.1 Xanthomonas oryzae pv. oryzae strain YN14 scaffold895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1785 31 100.0 35 ............................... GTGAGATCGGCCGCGTGCTCGCCCAAGGTGAGCCG 1851 31 100.0 37 ............................... ACATTAGCATTTGACGATTCTACTGGCGATCTGGTCC 1919 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 1985 31 100.0 37 ............................... CGCCTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 2053 31 100.0 33 ............................... TCGCCAGATTCCCGACGAACACATTGCTTTGCA 2117 31 100.0 35 ............................... TCCTGGTTGGTGTGGTATAGAATAACAGGGCTGAC 2183 31 100.0 34 ............................... CTCTAGTGTTGTGCTGGGGTCAATTTTCGATGAG 2248 31 100.0 34 ............................... TCACGTTTTGGCATCCTTGTCAATAGACAACTCC 2313 31 100.0 33 ............................... TAAGGAGGCTTTTATGCCAGAAACAAAACGGCT 2377 31 100.0 35 ............................... GACACTTAACCGGGTGAGAGATCTCCCAGACACTA 2443 31 100.0 35 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGTC 2509 31 100.0 35 ............................... CGCCTTTGCCATCTAATGCACATGATGGCCTAGCT 2575 31 100.0 34 ............................... CAGCGCAACATGGTCACGGTCTTGGCCGAAGAGC 2640 31 100.0 34 ............................... TCATGGCCTGACGTCCTTGTCAAGCAATTTTGAA 2705 31 100.0 35 ............................... CCAAGCTATTGCCAGCTTATTGTTGATGGGTACAG 2771 31 100.0 35 ............................... ATTGTTCCGGCAACGCACCTCAACGCCATAGCGAT 2837 31 100.0 35 ............................... TTCGTGTGAGTGTGAAAAATGAAGCCCGTGAACTT 2903 31 100.0 36 ............................... TTGAGACCTGGCTATGACTCAGTTGCAATGCAGATC 2970 31 100.0 35 ............................... TCGGCATCCCGAAAAACAAGCTGCGACTTGAAGGG 3036 31 100.0 34 ............................... AGCACTTTTCCGCCATGCTTCGCGATGAGGTGGG 3101 31 100.0 35 ............................... AGCCGTGCTGGGATGTTCTTCCGGCGCCACGTGCT 3167 31 100.0 36 ............................... ATCGGCATGTCCACCAAACTGCAGGAGTGGTTGGAT 3234 31 100.0 34 ............................... TGAGAAAGCAGCTGCCAAGGACAGCGAGGCGATT 3299 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 3365 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 3432 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 3497 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 3563 31 100.0 35 ............................... CTCTGGCTCAACAACGAAGGCGACACCAAGAACAT 3629 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 3694 31 100.0 35 ............................... TGGTGCAGGTACAAGGAGGGCAGAACCCACTGACT 3760 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 3826 31 100.0 34 ............................... CAGCGAGATGAGGCTGAGGCACGGGCACGTGTGG 3891 31 100.0 33 ............................... AGTACCAGAGTACCGCAAACAGATTAACAAGAC 3955 31 100.0 33 ............................... ACTGTAAAGGCCCTAATCCAGGGGCAGGCCAAT 4019 31 100.0 33 ............................... CAGAGGGTAGGTGGTGTGCCTATTTATTGGCAG 4083 31 100.0 35 ............................... TCGAGCTGTGGATATGCAAACTCAATTTGACCAGT 4149 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4214 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4279 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 4345 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 4409 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 4473 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 4539 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 4604 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 4670 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 4736 31 100.0 34 ............................... TGGCCCTTGTGTTGCGGAGGATACGTTTTTCCTC 4801 31 100.0 35 ............................... TTCTTTGGGATTCCAAGGAATCTTGAGTTAGGCTT 4867 31 100.0 34 ............................... ATGTTCAGCCGGATCGAGTTCACGAAGATCAACT 4932 31 100.0 34 ............................... ACGACCACCTGGGCGGCCAGCTTGAGCGACCGCA 4997 31 100.0 37 ............................... CTCGCGGTACCACCCGCGCCAGTAAGGGTACTGATCC 5065 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 5130 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 5195 31 100.0 35 ............................... AAGTCCTTGGCCGAGCGTATCGCAAGGCACTGCAT 5261 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 5327 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 5392 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 5457 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 5524 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 5590 31 100.0 36 ............................... TTTAGCTTTCAAACCGCTCTGCGCCAGCAAGCGATT 5657 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 5723 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 5787 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 5853 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCGCGCGGTGTCG 5919 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 5984 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 6050 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 6115 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 6180 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 6246 31 100.0 34 ............................... TCGAATACCGAGCCCGAACTGGTGCGTGACGTGC 6311 31 100.0 35 ............................... AAACCAGACGCCCAGAAACGCAAGCGTGCGATTGT 6377 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 6444 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 6509 31 100.0 36 ............................... GCAGCTAGCCGCTTGGCGTTTTTTTCGTCCCGAATC 6576 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 6642 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 6708 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 6774 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 6840 31 100.0 35 ............................... TTTGCCGGAGTACGGGCGAAACCCACGCCCGACGA 6906 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 6971 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 7037 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 7103 31 100.0 35 ............................... ACATCGCATCGACACACGGGCGTCTCAACCGGCAG 7169 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 7235 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 7301 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 7366 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 7431 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 7498 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 7564 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 7629 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 7696 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 7762 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 7826 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 7891 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 7957 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 8023 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 8088 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 8154 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 8220 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 8286 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 8350 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 8417 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 8482 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 8548 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 8613 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 8680 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 8745 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 107 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //