Array 1 102785-101744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEWD010000004.1 Avibacterium paragallinarum strain Z2S-2-1 NODE_4_length_136587_cov_163.194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 102784 37 100.0 33 ..................................... GAATGTCCATAGTTCTAGGGCGTCCTTATACAT 102714 37 100.0 34 ..................................... GTTTTCACCTCGCCCACATACTCAAGGGCAGCGG 102643 37 100.0 36 ..................................... TCATCAATATAGAAAAACTTCCCACTTTTGAAAGTG 102570 37 100.0 37 ..................................... AGTTTTTTCCTACCAATTCTTGCATTTTTTGTTTTAC 102496 37 100.0 36 ..................................... CTCTCTCCATCGTACCAACGCACCACGTACCACCCT 102423 37 100.0 31 ..................................... ATTTACAAGGGTATATTTGCATAATGGATCG 102355 37 100.0 34 ..................................... ATAGTTTTCCTTTTAGTTAGTTAGTTATAATCTA 102284 37 100.0 35 ..................................... CTTTTTCCCCTGGCTCACTTCCCAACACTTCGATC 102212 37 100.0 37 ..................................... TTTTCAAGCAAATCAAAACTGTAGCCAAACCCTAAAT 102138 37 100.0 35 ..................................... CGTATTGCACGGTTTGGGTTGTGTCCCCCTGAAAG 102066 37 100.0 33 ..................................... TAAGTTTTATGCGCACCCGCAAGCGAAAGCGAT 101996 37 100.0 34 ..................................... GGTTCAGGTACTTCAATACCGTTGATAAAACGTT 101925 37 100.0 36 ..................................... CAGGTATAAACGTCATAATTCGCGTTGATTTTTGGA 101852 37 94.6 35 ....................T.C.............. AAGTGAAACGTATTGGTTGCGTCATCGTGCCAGAT 101780 37 78.4 0 ............A.......CT.........CGTC.A | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 98.2 35 GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Left flank : ATACAATGCGTTGCTGTCGCAATATTCTCTTTCCCACCAATTAACTGGATTAATTGCGTGATATATTGAGGATTAATTTTCTTTACCATAATTTTTCCTTTCGTCTGAAAAATGTTCGTGCGTATCTTACGCCTTTTTATTTTTCCCTCAATGGGAACGTTCCCAATCTGTGATCTAAATCACATATTTAGATGAAAAATAGGGCAATGATAAAATGGAAAGGAAACCAAACAAAAGTGCGGTGGGAAATTTGGGGATTTTTGTAGTGAATACTTGGCAAAAGTAGATAAAAGAATGGTATAATACGCACCGTTTTTCGATTGATGAAGAATGAGATGATTTAGATTTTATCCGTTGTTCCGGTATAAGGGCAGGGGAGAATAAAGGAAGAAAATTGGTTAAATATTACTCAATTCAGTACCTAACTCTTCAACACATTGTCATTTTCTCGAAAGGTATTCCTAACCTATTGAGTCAAAAAGAAAAAATCATCATCCGCA # Right flank : AAAAAGAATAGTCTTAGAATGGGATTTTAGGAATAGTTATCAAAAACACTAAACCAACCCACAATCAATACAACTCGCCTTAATTTCTCTGTTTTCTAATAAATCAAATAATTGTTTGACGGCTTGTTTGCCAGCGGTGGTGAAGCCGAGATCCACGCTTAGGGTTTGAGGGAAGAGGAATCGCAATAGTGGGTTGTTGCCGATGCCGGCAACGCTGATGTGAGTGATTTGATGTTCTTGTAGCCATTTTACCACGCCGATTGCTAAGGTGTCGGTAGCGCAGACAATGGCGGAAATTTGCGAAAAATCCACCGCACTTGCTAATTGATAGGCGCTGTCGTAGCTCAGCTCACCCAGCACAGCATTGGGCGTAAGCTGATGATCTTGGCAAAAGCTAAGATAGGCTTGATGACGCAAATAACCTGTGGTCATATCGCTTTCTTGCACACCCAGATAAGCAATTTTTTGATGACCTTGCTGTAGCAGTTTTTCTAGTAAGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 71569-74206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEWD010000008.1 Avibacterium paragallinarum strain Z2S-2-1 NODE_8_length_97710_cov_166.723, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 71569 37 100.0 34 ..................................... CAACCAGCTTTCAATCTTGGAAAACACGCCCTCA 71640 37 100.0 36 ..................................... CTTCCCATACGCTTACGATTGCATGCGTGTTGTCGA 71713 37 100.0 35 ..................................... TATCGCCGCCGTACCCAAGCACCACGTACCACCAT 71785 37 100.0 36 ..................................... GTTTCTCGTCAAGCTCAATGCGAATGTATGCGTGTT 71858 37 100.0 36 ..................................... ATCGGATGGCGTTAAAAGTGAGTAAAAGCTACAATC 71931 37 100.0 35 ..................................... CTGCCATAATAATCACCATACCCGCCGTAAGAATA 72003 37 100.0 38 ..................................... GTGCGTGTTGAGATCATACCCTGTCGCCACATTGATGG 72078 37 100.0 37 ..................................... TCTCTAAGCTTTATAAGTTCTTCAATCCCTCCAATTT 72152 37 100.0 33 ..................................... TTTTTACTACCGAGGTAGCCGCTGAAGCTACCT 72222 37 100.0 37 ..................................... TTTTGGCTTTTCTTGCCTTTCTTTATTTTATGTCTTT 72296 37 100.0 34 ..................................... TACACACCTAAGAGCGGTGCTAATAAAGCTCTTG 72367 37 100.0 34 ..................................... TGCTAGGAATTCTTCTACTCCTCCGATCTCATCG 72438 37 100.0 34 ..................................... GAAGATGACACTACTTCTCCGAATTTCTTGCTCA 72509 37 100.0 35 ..................................... TCTTCTACTCCTCCGATCTCATCGATCGATTCCCT 72581 37 100.0 36 ..................................... AAGCTCTAGGAACTTTTCTATTCCCCCAATTTCTTG 72654 37 100.0 38 ..................................... CTCTAAGCTCTAGGAACTTTTCGATGCCCCCAATTTCT 72729 37 100.0 36 ..................................... AGCCAGCAATCAAAATATGTATTTTCAATCGGTCTT 72802 37 100.0 34 ..................................... TCTCCCACTACAGCTAGGTTTCGTGAGGTGCGTG 72873 37 100.0 35 ..................................... GAGATTTCTCTCCCTTATTTGTTCCTAGAGCTAGA 72945 37 100.0 34 ..................................... TCTTGGATGGCCTCTTTAGCATATTGGGAAGACT 73016 37 100.0 34 ..................................... CTTCTTTGACGTATATGGAGCTTTTAATCTCCCC 73087 37 100.0 36 ..................................... GATTTAATCTCCCCAACTATAGCTATGTTCTTAGTG 73160 37 100.0 36 ..................................... ATTCCCCCTATTTCTTCGAGGGATTCTTTGACGTAT 73233 37 100.0 35 ..................................... GTAGAGAATTGCACCCATTGCGCGGTTAAAGTGTT 73305 37 100.0 36 ..................................... ATTATGTCCTGCCTAGCTGCGGCTATCTCGCCCTAG 73378 37 100.0 33 ..................................... CCTTTTGTAAATCCGTTGCACGCCAAGAAGTCG 73448 37 100.0 35 ..................................... ATTTTATAGTCATACGATTTTCCCTTTTCGTTAGT 73520 37 100.0 35 ..................................... GCGGTAGTGGCTACTGAGGTAGCTGCTGAAGCTAC 73592 37 100.0 34 ..................................... CTTCATAACTATTCCTTCTTGTTAACTGAGACAC 73663 37 100.0 37 ..................................... CCTATCCCGCCAATCTCGTCAAGAGATTCCTTGACGT 73737 37 100.0 36 ..................................... GCACTAGCCCCGCGGTTCGTTCATTACCTAACATTC 73810 37 100.0 35 ..................................... GAAGATTTAATCTCCCCTACCACCGCTAAGTTCTT 73882 37 100.0 36 ..................................... CTCTTAACTCTAAGAGCTTTTCGTATCCTCCAATTT 73955 37 100.0 35 ..................................... AACATAAAGTGAGGATTTGACCTCACTTACAACCG 74027 37 100.0 33 ..................................... AGAACTTCTCAATACCGCCAATCTCAGAGATTG 74097 37 100.0 36 ..................................... TCTCTAAGCTCTAGGAACTTCTCTAATCCCCCGATT 74170 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 99.9 35 GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Left flank : TTACTTTTTTAATCTGCACACAATGCTAAAAAATGTCGAATTCGTCTTTTAACAAAAAAGAGCGGTGAAAAAATGCAATATTTATTAGGATATGACATTTCCGATGAAAAACGCTTGCAAAGAGTCCATAGAAAAATGGTAAAATACGCCACGCCTATACAATATAGCGTATTTTTATTTGAAGGGGATCGCAACGCATTACAGAAATGTATTGATGATATTTTGCGACTCATTCACAAAAAGCAAGATGATTTTCGGGTTTACCCTTTACCAAGCAACGCAAAACAATGGCAGCTTGGTGAAGCAATACTTCCAGAAGGCATAATTTGGACAGCCTTACCTCCCAATAATGAAGGAAAGGTGAGTCAAAAAATTGTGGCATAGAGAAATAAAATTGGTTAAATATTATCCAAATCGAAACCTAACTCTTCAAAGTGCGGTCATTTTCTCGAAAGGTTTTTATAACTTATTGATCGCACAAAGAAAAATCACCTTGCGCA # Right flank : AAAAAGAAATTCTATATATAAAAAAAGCAGGCATTCCGCCTGCTTTTTTCTATGTATTTATTGTAAATCTAAATTTACTTCGTATAACGTCTAAACACCAATGTTGCGTTTGTGCCGCCGAAACCAAAGCTGTTTGACATTACGGTATTTAAGCCCGCATTTTCTTTGGTTTCTGTTACGATGTTCATTCCTTCCGCTTGTGGATCGAGGGTTTCGATGTTAATGCTTGGGGCGATGAAATCGTTGTCTAACATTAATAAGGTATAAATGGCTTCGTGTGCACCAGCCGCACCTAGTGAATGGCCTGTCATTGATTTGGTTGATGAAATGGCTGGTTTTTCATTACCGAAAACATTTTTGATCGCACCTAATTCTTTTACATCACCCACTGGCGTTGACGTGCCGTGTACGTTGATGTAGTCGATAGGGGTATCTACTGTTGCCATTGCTTGTTTCATACAACGTTCCGCGCCTTCGCCGCTTGGTGCAACCATATCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //