Array 1 2332154-2331314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053228.1 Blautia pseudococcoides strain SCSK chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2332153 33 100.0 33 ................................. AATCTCATGCATTTTTATTAATCAAGTGCTGTG 2332087 33 100.0 33 ................................. AATGTTAATGTTTTGGTGATCAATATAGCTAAG 2332021 33 100.0 34 ................................. AGACTTGGATGAACGATTATCCCCGGGCACTGTT 2331954 33 100.0 35 ................................. ATTTGAATAGCTTAAAGCATAAAAACAGTCGGGAA 2331886 33 100.0 34 ................................. ATCTTGATTTGGTAAACGGATTTCGCCATAAAAA 2331819 33 100.0 35 ................................. TTTTCCCAAAAGTCCGGAGGGGCAACAATTCCGGC 2331751 33 100.0 34 ................................. CCACCTGTATTCCATGGGATGTTGTGATGATTCT 2331684 33 100.0 35 ................................. ATCGCAAGCAAAATCTCCACAATCCGAATAATCCT 2331616 33 100.0 33 ................................. ATGGCAAACGATGGTGGCGTAATATCTCAAAAA 2331550 33 100.0 35 ................................. AAAACATTTTTGGTAGAGCAGGATACTGACGGAAC 2331482 33 93.9 34 ..................C.........A.... CGTTCTGGCTGCAGGCGGAACATAGTGTAATGTC 2331415 33 87.9 36 ..T.........A..........A.....T... TCTTGTAAATAGGTAAATATCTGTACTCGGGCAAAC 2331346 33 84.8 0 ............A........A.T..A....T. | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 97.4 34 GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Left flank : TAATGGCAAACAACCATCCACCCGTGGAGGAAGCCCAAAAGGAACCTCTTCTGCAAAAACCGGAGACGAAACGCCAATTGGCATGTTTGCGGGAGTTGGAGCACTTGCACTGATTGCTATATTAGCGTGTGTGATCAGCATTTTAAAGAAGAGAAAAAGGGCATAATCGGGAACAAAAATAGAAACTACGCTATTATGTTAAAACATTCTGGCAGTTGATTACGTTCACAACTGCCGGGCAAAAGGGAGAATGCCTTTATATCTTCCACGAAAAAGTTTTGTATAACAGGAAGAATCCTCTGTATATAGATACAGGGGATTTTTCAATGTAGATATCAGGTGCGAATGCCTAGTGAACATAAAATTCAGGGGGGATTCGCACCTATATTTTGATGGAAAAAGTGGAGTATTTGTGGTAAAATAAAATAATAGATATACAAAACTTATAATATTTATGTGAAATTCACAAAAATGACTTATGGTTTTTGTGAAATGTTGCT # Right flank : TTTACATATTATATGATAGTGTTCCTCCAAACTGGTCACTCTTCACAAGAACAGAATAACATTCTACCAGAGCATCTGCCGAAGACAAAGACGGCAGGTGCTCTGTTATCTTTATTTGCATAAAACAGTAAAATATTGTTATTAAGATAATTTTATTAGACTATTTGCTGAAATCTGTTATAATACCTTTTAGATGTATTAAGGAGGAAAACTATGCACAACAAACAAAAAAAGAATGCATGGATACCTTCATACGCAGTATTTCCGCTGCTTTCCTGTGTGACGGTAAATTGTATCGTATATTTTGGGATTTCCAGGATTGCCGATGAATGGAAGCATTATGACCTGACGCTGCCTGTTGACAGGGCAGTGCCTCTGATTCCCGGATTCGTATCGGTTTATCTGGGGTGCTATCTTTTTTGGATTATCAATTACATATTGATCGCGAAACAGGGTGAAGAACACTGTGTCCGTTTTGCCGCGGCAGATATTATGTCAAG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4745230-4745921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053228.1 Blautia pseudococcoides strain SCSK chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4745230 32 100.0 33 ................................ TTGAATCCTCTCCTTTGACAACCATTTGTCAGC 4745295 32 96.9 34 ...........G.................... AGTGACCGTTGTACCCATACAAGCTTGTCTTCCA 4745361 32 100.0 34 ................................ GGGAACAATCAAATATTTTAGATCAGGTGCATAA 4745427 32 100.0 34 ................................ ACGCTAGTTCTATAATGTTGAGATAGAGTGTTTG 4745493 32 100.0 34 ................................ AACCGTCTCTTCCCCATTCTCCACCTTATCAATT 4745559 32 100.0 34 ................................ TACACTTTTATTATATCACATACGTGAGAAAAGT 4745625 32 100.0 34 ................................ ACTACAACGACTGAGAGCTCGACTGCCAGTATAG 4745691 32 100.0 37 ................................ CCGGTTTGGTCCGTGAGGATGAGAAGGGGCTGCTCAG 4745760 32 100.0 33 ................................ CAATAAATCCGAAATAAAGCTGCCTATGACTGT 4745825 32 100.0 34 ................................ TGTCTAAATAGACGGAGCATATCATATAAGCCGT 4745891 31 78.1 0 .......-................GAG..CGG | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 97.7 34 GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Left flank : GATGAATACCCACCATTTTTTTGGAAGTAGGTGAAGTGATGTTAGTATTGATTACCTATGATGTGAATACAGAGACAGACGCCGGGAAAAGACGCCTTAGAAAAGTTGCCAAACAGTGTGTGAATTACGGAAGGCGGGTACAAAACTCTGTTTTTGAATGCATCCTTGACAATACCCAGTGTGTTTCATTGAAAGCTGTGCTGGAAGATATTATTGATAAAGAAGTTGACAGCCTGAGATTTTATTATCTGGGAAATAATTATAAAACAAAAGTTGAGCATATGGGGGTAGATAGAGGAACGGCAGCTGATTCAACTTTGATTTTCTAGTGCGAATATGAAGTGAACAGAAAAACCCTGGGGGATTCGCACCGGGTTTTAGAGATAGGATGGGTGGATATGGGGATGGTATATGGGGCTAATTGGGATTGGATGATAAAATATGATTGAAATTTGAGGAAGTTGCACAAATATGTAGTGCTAGATTTGGTGGTTTTTGGT # Right flank : GTAAATATAATAATTAATTACCTCCTACCCGATTCCTAGTTGCCTTGAAAGGGTAAATTGACCATGATATTTCATTTAATCTATATTAGTAACCTTTTCCCATTTCCATTTCCACCTTCCCGTCAAATACCACCCAAACGATATCACATAATTAGCCGCCCACCCCATAGGCACAGCCATCCACGCAACCTGAATCCCATACACCGGCGCGAACACATTAGTCACGATCACCCGAATAGACAGATTCACCAGATTAGCCACTGTAAATGCTTTCACATCTCCGGCCCCCCGCAGCAGCCCGTCCGTGGAGGCTTTCAGTCCAATCAAAGCGTAAAAGAACGAAAGGAATTTCACATAATCAAGCCCTGTCTGAAAAGCGGCACTTCCATTTCCGGCATCTAAAAATGCTGAGACAAACACATTCCCAAACAACTGATAAAGAACACATAGAAACGCCCCGGCGCTCAGAACCGCCGCATAGCACATCCGATATCCCTTCT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //