Array 1 90998-89489 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFD01000010.1 Bifidobacterium moukalabense strain GB62 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 90997 36 100.0 28 .................................... GACGGCGTATCTGGAATGCTCGTATTCG 90933 36 100.0 28 .................................... AGGGAGCCGTGAACCGGTCGAGCATGCT 90869 36 100.0 29 .................................... GATTATCCGAATCCTTATACTCGATCTGA 90804 36 100.0 28 .................................... CGGGAGAACTTCATGATTTCCGTGAAAA 90740 36 100.0 28 .................................... GGTGAAGTACATGAGGTGTGCTCGTGCC 90676 36 100.0 28 .................................... GCAAATGCCCATCCTACAGGTGCCGTGC 90612 36 100.0 28 .................................... CTTTCGCCCGCTCGACGTCACCGGTGAT 90548 36 100.0 28 .................................... TCGCGCGTAGCACACCGTCCTGCCCCTC 90484 36 100.0 28 .................................... TGATGCGGACACTTTGATGCACCGCTTC 90420 36 100.0 28 .................................... CGGTAATATTCCTTCAATCCGATGCCGT 90356 36 100.0 28 .................................... GCCATCCGCACGGATTCCACATCATCCA 90292 36 100.0 28 .................................... TAGAATCCACGCCGCACTCGTGCAGAAG 90228 36 100.0 28 .................................... AACAGAAGCGGCGCATCGCATCGCAGGA 90164 36 100.0 28 .................................... GCCGGAAGCATCACAATCGTCCACGTCG 90100 36 100.0 28 .................................... CTGGTGCCGATGTAGGGCAGCCATGCGA 90036 36 100.0 28 .................................... GGGATGCCGAGTATGCCGTTGGCTGTTT 89972 36 100.0 28 .................................... GCCGGAATGTGGATGGCCGGTTCTTCGC 89908 36 100.0 28 .................................... CACTATCCGAAACCGTCAAGACCCTAGC 89844 36 100.0 28 .................................... CGGTGGCATGGCATCACGCTCGCTGGCG 89780 36 100.0 28 .................................... ACGGCACTGAGGATACCTACTGCGAGCA 89716 36 100.0 28 .................................... AACTGCCCGGATTCTTCACGAAGGATTG 89652 36 100.0 28 .................................... TCAGCCGCACGCCGAAGGTTACGGGCAA 89588 36 100.0 28 .................................... AACTGTATGCGACAGCTGATCCGACCGG 89524 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 24 36 100.0 28 CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCTTGACGATACCAAGTTCAATAAGCAGTTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGAGGTATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGAAGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGATGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAAAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGTGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAAAACCTAGTTAAAAGGCGGAAAATGGCCCTTCTTGGCAAGCATA # Right flank : AAGCGTGACATCGTGTGGCAAGTTTTATCAAATGGCATCTCCTTTCGAAGACGCCATGCGACTTCTCGTCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTTCCAACGCGGACAGGAGATGGTCCTTCCTCGTCCGTTTCGGATCGACGATGGGCATTCCCTCTCGGATCTGGTTGTAAATGGATGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCTCGGGTAGTTCGTTGGCGAGCTCGTCGCAGCCAACCGCACGTATGGATTCCCCGAGGTCAGTCAGGAATCGCAGTTGCTCCTTGGCGGTTCGCTCCGAGAGGACTTTTTCCGTCCTCCAGTGAGGAGTGACTGCGTTCCATTCGGCGAAAGCCGTCATCATGTCGTGTTCCATGTCCAACACATAGTCGGGCACGTCCGCCCCGCGAACGGGTGCAGGTTCCATCGTGGAAGCCGGTTCGTGGAATGGTTCTTGGTCGGCGCATATGGTCTCTTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 128597-131825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJFD01000003.1 Bifidobacterium moukalabense strain GB62 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 128597 36 100.0 35 .................................... CCGCATCCTCGGCCACGGCATAGGGGCCATTGCAG 128668 36 100.0 35 .................................... GGAACGACAGGTACATGTGACGCAACCATTTGGAA 128739 36 100.0 37 .................................... CCGATCGAATTGAGAACCATGTTATTCATGGCCACCA 128812 36 100.0 35 .................................... ATCGATTAAGTGCGCTGGAACTATCGGCATCAGCC 128883 36 100.0 40 .................................... CAGCAGAGAATCCCGGACGTGACTCAGGCCGGTATCCATA 128959 36 100.0 35 .................................... GGTTCCAATAGTGTGCCGGTTGAAACATTGCCCTT 129030 36 100.0 35 .................................... TTACGGGCCTGAGCGATGGCCTTGTCCAGATCACC 129101 36 100.0 38 .................................... CTGCGATTTCGATCGCACTTGCTGTTCCAAGCAGAAGG 129175 36 100.0 36 .................................... CTCTCGGGCAGCATCACTGGAAGCGCTGCGACCGCA 129247 36 100.0 36 .................................... GCAAGGATTGTGCGCAATGCTCGGCCATGTCCCGCC 129319 36 100.0 37 .................................... TGGCGGCAGCTGCGGCACATACCCCACCTACAAGGCC 129392 36 100.0 36 .................................... GAGAACATGGATGCCGTCTACGTGTTGAAGGTGGCC 129464 36 100.0 37 .................................... TCCATGGAATGAGCATCACTGGCTCAAGCATCGATTC 129537 36 100.0 38 .................................... CGCTGGATTGCCAAGGATAGGGATGGCTATGCTGGCCG 129611 36 100.0 37 .................................... GCAAGTCGGCGTGTCGCACCTGTACAATGGAACCGTC 129684 36 100.0 37 .................................... CCAAGAGCTATACGGCTCCCTCGAACGCTGCGTACAT 129757 36 100.0 39 .................................... ACGACCCGAAAAACCGTGCTGGAGGGCTGCAACGTGCAG 129832 36 100.0 35 .................................... GGCACGCAAATGACATACGGGAGCCCCCCGAACGT 129903 36 100.0 35 .................................... CACAATCCAAAAAATGCAGCATCCAAGGATGCCAC 129974 36 100.0 36 .................................... CACGGTTAACGGACAGGCGGGAAACCATTGGAAAAC 130046 36 100.0 37 .................................... TGGACGCACAGTCTCCGGCACAGGGCCGCCACGCAGG 130119 36 100.0 36 .................................... TCTTCGATGGCCTGCATGGTGCGCTGTTTGAGTACG 130191 36 100.0 37 .................................... TCAGAAGAACCAGGAGGCCAAGCAGCGCACGCAGGAG 130264 36 100.0 38 .................................... AAGAGCGCCGAAGAACAGTTGAAGAGCGCGCAGAACGG 130338 36 100.0 35 .................................... GAGTTTGTCATCGGCAAGTGCCGGGCAATGCTCGG 130409 36 100.0 36 .................................... GAAGCCATCCGCCCCTACCTATCGATGGTGCATCAA 130481 36 100.0 36 .................................... GGTGTACGAGCGTACGGACTCCGATGTTGCGCCGGT 130553 36 100.0 39 .................................... CGCGCATGATCCGAGCTCGGCCTCCATCGGCGTCTACAA 130628 36 100.0 39 .................................... GGGTGCGTGACGGGTGGTTGACCCTGACGCCGGGCGACG 130703 36 100.0 36 .................................... ACGTGCGGTCTGCGTTTCGTCTCATCGTCCGCACGT 130775 36 100.0 36 .................................... ACGTGCGGTCTGCGTTTCGTCTCATCGTCCGCACGT 130847 36 100.0 35 .................................... GTCAACGGCAGCGGCCTGCGATTCACGCAGGACTC 130918 36 100.0 34 .................................... TCCTGCACGACCCCCAAGGCCACCGATTTCGACG 130988 36 100.0 36 .................................... GGTTTTGAGGAAATAGCAAGCAACGTGCTTGGATAT 131060 36 100.0 39 .................................... GGCGGCGGGCGGGACGTCGAGCGATGAAATCAGCTTCAA 131135 36 100.0 35 .................................... AAGACGTCGGCGCAGGAACTGTATTCGCTCGTATA 131206 36 100.0 36 .................................... GACAGGTCAACGTCGCTCATACTGCACAGCTGCAAC 131278 36 100.0 37 .................................... GTGACACGGTATCCGGTTGGACTAGGCGTATGACCGC 131351 36 100.0 37 .................................... GCGGCATCGAACGCGGTGGACGTGAAACAATCACAAA 131424 36 100.0 36 .................................... GTGATCACCGGACGCTCCGGCAAGACCGACGACCGC 131496 36 100.0 37 .................................... TGCCTCGTCACAGGCTGGACATGGGGAAATCGTCTAC 131569 36 100.0 36 .................................... AGGATCCAGGACAAGACCTTCACCGTCACGGAGAAA 131641 36 97.2 34 .........T.......................... CTCCTGAACGTCACTGAAACCATCGCCAACGGCA 131711 36 100.0 35 .................................... TACACGCATCCGGGGAACAAGCTGGGCGTCTGGCT TGCTCAGG [131726] 131790 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== ======================================== ================== 45 36 99.9 36 ATTCCTGAGCTCTAATGCTCAGGACTTCATTGAGGT # Left flank : TATTTAGTTGCATATGATGTGAGCGATGATTACCGTCGCAGTCATGTAGCGAAGATTCTTCAGCATTATGGAGAACGGCTGCAATACAGTGTTTTTCTGTTGCAAGTGCGCCCCTCAATGATGCTCAACGTACGCATGAAGATTGAGAAAGAGATTGACTACGAAACCGATTCCGTTGTGTTCTGCTCATTGGGGACAATTGCGCAGACGGAAGAGGGATTGGATTTTCTGGGGCATCGAGGATATGCAGACTTAGAAATTCCCACAATTATTTGATTTCAGTCAAAACGGCTGGGCTGTTTGATAACTAAAGAGTGTTTCGTCTTGCATGCGCACGAGAGGTGAATCACTTCCGAGACGCGCGGCAAGCGCTCGCATGTGGAAAATGGCGTTTCTGTGGGATTCAGCGTTCCCAGATTCGCATTTTTCATAGGGTATGAAGTACATCGCTCGCATAATTGCTTGAGATACATGTCACTACAACGCTCTACACTGAGACT # Right flank : TCGCAGTAGCGGCTTTGCGGCGAAAAGACGAACACCGCGTTTCTCTTTTCCGCCTGCTATACTGGCTCGTGTTTCTATGCCTTAGAAATACGAGCCAGAAAGCGGGCGGCGGCCATGATGCCTTATCACCTTCTTTCCGTTTCACGGGTCTCTGGCGGATCTGCAAATCCGTCGGAGACCCTTCTTCCTTTACGTCTCCTTATCCTATACCTTTTACTCCAGAAGGCAAATCCATCGTCGCTTCTACGACTTAATCAAGTAAATAGAAATGTAGGATTATTCTATTTGCGACTGTGCCTTGTCTCTCAGTTAGTCGAACGAAGCGCGTAACGCTTTGTCGGACTGATTCCGAGAGGGTGGCGACGGTAGAATCCGTAAAGTAGGGACGGTAGGAATTGTAAAGTAGCAGGCTGAAAAAGGTAGGACAGGCAACTCCCCTCGCAATCGTACGGCCTCACACCACACCCCCTCACAATCCCATCCACCTACGCAAATCAGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTCTAATGCTCAGGACTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //