Array 1 523674-524350 **** Predicted by CRISPRDetect 2.4 *** >NC_018592.1 Listeria monocytogenes SLCC5850, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523674 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523739 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523804 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523868 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523934 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 523997 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524061 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524126 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524190 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524256 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524279] 524322 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2644038-2641953 **** Predicted by CRISPRDetect 2.4 *** >NC_018592.1 Listeria monocytogenes SLCC5850, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2644037 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2643971 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2643905 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2643839 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2643773 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2643706 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2643640 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2643574 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2643508 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2643442 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2643376 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2643310 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2643244 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2643178 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2643112 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2643046 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2642980 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2642914 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2642848 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2642782 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2642716 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2642650 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2642583 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2642517 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2642451 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2642385 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2642319 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2642252 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2642186 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2642120 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2642054 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2641988 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //