Array 1 235911-236239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEI01000016.1 Enterobacter hormaechei subsp. hormaechei strain GN02315 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 235911 28 100.0 32 ............................ CAGCCCAAAAGTGAACATCTTCGCAAAATACT 235971 28 100.0 32 ............................ GTAATCCAAAAAGCGGCGACATGTAGTCACGA 236031 28 100.0 33 ............................ CTGCTGAATATCAGTGTTTCCTGCAATCATCAC 236092 28 100.0 32 ............................ ATATTTGCCACTGTTTCAGGCTGCTTTCCTTC 236152 28 100.0 32 ............................ TCTATCAATTACCACGCTCGAAATACGAGGAG 236212 28 71.4 0 ............A.......TAGGCTC. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GTTTTCGCTATGTATGCAGCCACGGTTTGTTTCATGGTTGTCCATCTCCTTTATGTGATATCGCTTACAAGCTTAGAAGAAAGTGACTGTATTGCCTGCACAATACCCCTCAATTAAAAGTGGTTTTCCTGCGCGCGTATTCAGCATGATCTGGTTATCGACTGGATGAAAACAGATTTTATTTCAACGGATTATGTGTTTTTTGAACGCTATTAATGAAAAGCTATAGCACGACGATTTTGGCAAACTCTTTTTACCCCTTGCCTTCGGCGGGCTGATGCTGGCGTTTTCAGGGGCAGGGCGGTTTGCGCGGGGAAAGGCCCGGCGGGGAAGAGAGAGTTGGATGCTGGAATGCAGGAAGGGGACCGCGGACCCTTTTTTATTGGTGGATTTTAAGTGGTTGATTTTATTGTACTAGATGGTAAGTGGTAAAAAAGGGTTTTTGAGAGATTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCTG # Right flank : AACGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTCGAAAGGCAATTGAGCTGGCCTGCACGGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTCGAAAGGCAAATGAGCTGGCCTGCACGGGCAAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTCGAAAGGCAATTGAGCTGGCCTGCACAGATAAAAAAGCCCGGTAGCGCTCACGCTTACCGGGCCTGCGGAAGAACAGCGACAGTTTATGCCAGAACAAGATCGCCCTGTGGATGGCATGAACACGCCAGCACATAACCCTCTGCAATTTCGGCGTCGGTCAGCGTCATGGTGCTGGTGACCGTATATTCACCGGAAACCACTTTGGTCTTACAGCAACCGCACACCCCGGCACGACAGGCCGCCACCACCGGTACGTTGTTGCTTTCCAGCGCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 251505-252972 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEI01000016.1 Enterobacter hormaechei subsp. hormaechei strain GN02315 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 251505 28 100.0 32 ............................ GGGTGCATTGTTCGTAGTGGTTTCATTGTCCA 251565 28 100.0 32 ............................ AGAGGAAACGGTCGCGCCGTCAATCCACCCCT 251625 28 100.0 32 ............................ AGATGAATCATACGACGGATAGTTGGTTCCGC 251685 28 100.0 32 ............................ AGCTTACGGAATCGTGGCGGATAACATCACTT 251745 28 100.0 32 ............................ GCGCGACTTCGCATAGAGTGCGCCAGGCGAAT 251805 28 100.0 32 ............................ AAGCCACTCAACGGCTTCTTTCGTGTGGTCGT 251865 28 100.0 32 ............................ TGGTGAGTAGTGCGTCCTGCTGATGGCTTAAA 251925 28 100.0 32 ............................ GCTGACGCAGAACCGTATTACCAGCGACAGCG 251985 28 100.0 32 ............................ TATCGCCGATAGTAGACGGGGCGCTGGCGTTC 252045 28 100.0 32 ............................ AGCGATGGGACAGCGGCTAAAAGTGTGATCAC 252105 28 100.0 32 ............................ CTCATCTGGCCCAGCATACGGCGGGCGATACG 252165 28 100.0 32 ............................ TACATCCTGACGCATCCATTCCCTTGCAGCTT 252225 28 100.0 32 ............................ CTGACTGGCTGCCGCTGGCGCAGGAGGGCAAA 252285 28 100.0 32 ............................ TGCCCCACGCCGGCAATTACGTCTGCCGCCGG 252345 28 100.0 32 ............................ TTCGGGCAGCAGAATGTCGGCATCGTCTGCCG 252405 28 100.0 32 ............................ GACAACTCAGGAACACGCGCGGGCTCAAGAAG 252465 28 100.0 32 ............................ GTTCCGCAGCTTAAGAAAGTCAGCACGAAAGT 252525 28 100.0 32 ............................ GTGCGGCTTTCGCTTCGCCGTCTTTGGTTTCC 252585 28 100.0 32 ............................ CAAGGGCCAGCTGCGGCCATCGGGCTGAGCCT 252645 28 100.0 32 ............................ AGAAAAATTGCGCTGGACTATTTGGGGATCCG 252705 28 100.0 32 ............................ ACGAAAGCTGGATGCGATGCCGGTACTCGTCG 252765 28 100.0 32 ............................ TAACTCCTGGACTTTGCGCACAAAACGCCGCG 252825 28 96.4 32 ........................A... ATAACGATTACACCGGGAACGGCGTTACGACA 252885 28 100.0 32 ............................ CGCACTTCAGCCAGGAAGGCATCGGTGGCGGG 252945 28 78.6 0 .....................AC.CCCC | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCGCAAACGCAGCCCATTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGTGTGACTTTCAGGTGGTTGAATTTGACGATGAGGCGGAACGGCCAAAAGGAAAAGAATGGCTTCTGGAAGATACCGAAACCAAGTGCGATTACTGCCAGGCATTAAACCACGTGCTGCGGGTGTCGCATTTTGACCGCGAGATGCTGCCCCATCTGACCGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGCAATTCATATCATTAATTGACCAGTGGTGTAGCGCGTCGGGGGAGGGACTCCGGCGCGGTATGGCGAAACCCTTTTTTCGAGTGGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGAATTGTTTCA # Right flank : CCCAAACATTCATCCCAGCTATTTAAAAACCATAATCATCACCACAATCCTCGTTGTATTTTAAATAAACAAAATATTCATTCACCCGACAACCATATTTTCTCATATATATTATTCATAAAAATAATACATTAAATACGGCAGAGTTTTTTCATTTCGACATTACGGTATTTATTATTCATTTGATACACGTCACATTTGTCTTCGTCTTATCTCCGATAACATACCCCGCATTCAACACATTGAAATAAAAAGCACTTGCTATGCCAGTGAACAGCATTACCCCGTCCGACTTAAAAACCATTCTTCATTCAAAACGAGCCAATATCTATTACCTGGAGAAATGTCGTATTCAGGTCAATGGGGGCCGTGTTGAATATGTCACTCAGGAAGGTAAGGAGTCGTTTTACTGGAATATTCCCATCGCTAATACGACGGCACTCATGTTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAATTTGCGCGAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 262834-264000 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEI01000016.1 Enterobacter hormaechei subsp. hormaechei strain GN02315 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 262834 28 100.0 32 ............................ ACACTGTAGGATCGTCTGCTGATACGCTAATA 262894 28 100.0 32 ............................ TTAAACGCCGCGTCAGGCTTGTCGATTGCCTC 262954 28 100.0 32 ............................ AGATTTCGTTCAGCTCTGGGTAGTTCACCATC 263014 28 100.0 32 ............................ TCGCGCATTGATTGGCGATGCGTGAGCGGAAA 263074 28 100.0 32 ............................ TTTGCAGCTGAAAGCCAGCGCAACCGGGCCGC 263134 28 100.0 32 ............................ CGTTTGCCCTGGCTTATGCCGGGGCTTTTTTT 263194 28 100.0 32 ............................ TGATAAAATCGCGGTGGCCGATGCCGTTGTGA 263254 28 100.0 32 ............................ CGGCGCAGTAAACGAAGATGCGGCTATGGCGC 263314 28 100.0 32 ............................ TTTCGAAAATGCTAATAAAACGGCGAGCTGGC 263374 28 100.0 32 ............................ TTCCTTGCCGAGCTTGTTAAGCGCATCCATCG 263434 28 100.0 32 ............................ CACGTCTGCCGGGCGATACCCGCTTGTACCGT 263494 28 100.0 32 ............................ TTGTTCCGCAAGCGTGTCGATCTTGCTCTTCA 263554 28 100.0 32 ............................ ACGCCGCGGACCTTATTTGCGATCACTTCAAC 263614 28 100.0 32 ............................ CTGCCGGATGGATAACGAGAAGGGATTCTGGT 263674 28 100.0 32 ............................ TGACGACCTGAACCGGCTGACAGAGCGGGCAG 263734 28 100.0 32 ............................ GCAGGTACGGCACGGACTTCAAGCGCCACCAC 263794 28 100.0 32 ............................ TGTTTGTCGATGTTGTTCATTGGGCGGCTCCT 263854 28 100.0 32 ............................ AGTCTGTTAACTTCTGCCAGTCCCCGCCGCTG 263914 28 100.0 32 ............................ TCATCGAGTGTGAGGCTGTGTGATTTTATTGT 263974 27 71.4 0 ......CA.......AC..A.AC.-... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTCAGCGTCCGGCCCGTACTTTTGCGGCGGGCAACGTTACGCTCGTTGATTCCCATAACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTGCTTGCAGGTAAACCGGCGTAGCGCCAAAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCAGAGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATGAGATAGGGAACGGGTGTTTTTTTGTTCAGGGTGGGATAAAAGAAGGATGGTATTTGACCCTAATTTTTGACCAAAATGTAATATATTGATTTTTCGCTTAAAGATCCGGGGGAGCAAAAAAGGGTTTGAGCAGGGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGGAAGGTAATATTACA # Right flank : AGCCGAAACTAAACCCAACCAACCGTTCAAATAATCGACTGTCCTGAAAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGCGTATTGCCCAAGCGTCACGGTACAACCGAACAGAAAGCGCATTCGTAAAGGGGAGACGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //